339 1 3 http://www.ebi.ac.uk/swo/SWO_0000192 GeneSelector 'GeneSelector' SubClassOf 'implements' some 'Linear modelling' 'GeneSelector' SubClassOf 'implements' some 'Wilcoxon' 'GeneSelector' SubClassOf 'implements' some 'WilcEbam' 'GeneSelector' SubClassOf 'implements' some 'BaldiLongT' 'GeneSelector' SubClassOf 'implements' some ''t-test'' 'GeneSelector' SubClassOf 'implements' some 'SAM' 'GeneSelector' SubClassOf 'implements' some 'Bayesian Model' 'GeneSelector' SubClassOf 'implements' some 'FoxDimmicT' 'GeneSelector' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Linear modelling' 'GeneSelector' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''t-test'' 'GeneSelector' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'BaldiLongT' 'GeneSelector' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'WilcEbam' 'GeneSelector' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'SAM' 'GeneSelector' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Wilcoxon' 'GeneSelector' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'FoxDimmicT' 'GeneSelector' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Bayesian Model' http://www.ebi.ac.uk/swo/SWO_0000191 GeneSelectMMD 'GeneSelectMMD' SubClassOf 'implements' some 'MMD' 'GeneSelectMMD' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'MMD' http://www.ebi.ac.uk/swo/SWO_0000193 GeneSpring 'GeneSpring' SubClassOf 'output of' some ('software development' and ('has participant' value 'Strand Life Sciences')) 'GeneSpring' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000743)) http://www.ebi.ac.uk/swo/SWO_0000195 GeneTac Analyser 'GeneTac Analyser' SubClassOf 'output of' some ('software development' and ('has participant' value 'Applied Biosystems')) 'GeneTac Analyser' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000036)) http://purl.obolibrary.org/obo/GO_0008150 biological_process 'biological_process' SubClassOf 'process' http://www.ebi.ac.uk/swo/data/SWO_3000060 Affymetrix-compliant data 'Affymetrix-compliant data' EquivalentTo 'has format specification' some ('data format specification' and ('is published by' value 'Affymetrix')) 'Affymetrix-compliant data' SubClassOf 'has format specification' some ('data format specification' and ('is published by' value 'Affymetrix')) 'Affymetrix-compliant data' SubClassOf 'has format specification' some ('data format specification' and ('is published by' value http://www.ebi.ac.uk/swo/SWO_1200000)) 'Affymetrix-compliant data' EquivalentTo 'has format specification' some ('data format specification' and ('is published by' value http://www.ebi.ac.uk/swo/SWO_1200000)) http://www.ebi.ac.uk/swo/data/SWO_3000059 CEL ASCII format 'CEL ASCII format' SubClassOf 'is published by' value 'Affymetrix' 'CEL ASCII format' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200000 http://www.ebi.ac.uk/swo/data/SWO_3000058 BAR 'BAR' SubClassOf 'is published by' value 'Affymetrix' 'BAR' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200000 http://www.ebi.ac.uk/swo/data/SWO_3000057 CDF ASCII format 'CDF ASCII format' SubClassOf 'is published by' value 'Affymetrix' 'CDF ASCII format' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200000 http://www.ebi.ac.uk/swo/SWO_0000154 COBRA 'COBRA' SubClassOf 'implements' some 'ODE Algorithm' 'COBRA' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'ODE Algorithm' http://www.ebi.ac.uk/swo/SWO_0000153 VCell 'VCell' SubClassOf 'implements' some 'DAE Algorithm' 'VCell' SubClassOf 'implements' some 'ODE Algorithm' 'VCell' SubClassOf 'implements' some 'PDE Algorithm' 'VCell' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'PDE Algorithm' 'VCell' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'ODE Algorithm' 'VCell' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'DAE Algorithm' http://www.ebi.ac.uk/swo/SWO_0000155 COBRApy 'COBRApy' SubClassOf 'is encoded in' some 'Python' 'COBRApy' SubClassOf 'is encoded in' only 'Python' 'COBRApy' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 only 'Python' 'COBRApy' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'Python' http://www.ebi.ac.uk/swo/SWO_0000158 libSBML 'libSBML' SubClassOf 'is encoded in' some 'Python' 'libSBML' SubClassOf 'is encoded in' some 'Java' 'libSBML' SubClassOf 'is encoded in' some 'C Sharp' 'libSBML' SubClassOf 'is encoded in' some 'Perl' 'libSBML' SubClassOf 'is encoded in' some 'C' 'libSBML' SubClassOf 'is encoded in' some 'GNU Octave' 'libSBML' SubClassOf 'is encoded in' some 'C++' 'libSBML' SubClassOf 'is encoded in' some 'Ruby' 'libSBML' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'Python' 'libSBML' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'GNU Octave' 'libSBML' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'Perl' 'libSBML' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'C' 'libSBML' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'C Sharp' 'libSBML' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'Java' 'libSBML' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'C++' 'libSBML' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'Ruby' http://www.ebi.ac.uk/swo/SWO_0000152 iBioSim 'iBioSim' SubClassOf 'implements' some 'ODE Algorithm' 'iBioSim' SubClassOf 'implements' some 'Monte Carlo' 'iBioSim' SubClassOf 'implements' some 'Markov Chain Monte Carlo' 'iBioSim' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Monte Carlo' 'iBioSim' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'ODE Algorithm' 'iBioSim' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Markov Chain Monte Carlo' http://www.ebi.ac.uk/swo/SWO_0000164 GLAD 'GLAD' SubClassOf 'implements' some 'Modified version of the GLAD algorithm (Gain and Loss Analysis of DNA)' 'GLAD' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Modified version of the GLAD algorithm (Gain and Loss Analysis of DNA)' http://www.ebi.ac.uk/swo/SWO_0000166 GLEAMS software 'GLEAMS software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Molecular Neuroscience Core, Center for Behavioral Neuroscience, Atlanta')) 'GLEAMS software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200012)) http://www.ebi.ac.uk/swo/SWO_0000168 GOstats 'GOstats' SubClassOf 'implements' some 'Hypergeometric probability' 'GOstats' SubClassOf 'implements' some ''t-test'' 'GOstats' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hypergeometric probability' 'GOstats' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''t-test'' http://www.ebi.ac.uk/swo/SWO_0000176 Gene Pix 'Gene Pix' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Molecular Devices')) 'Gene Pix' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000299)) http://www.ebi.ac.uk/swo/SWO_0000175 GeneData Expressionist Analyst v4.0.5 'GeneData Expressionist Analyst v4.0.5' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Genedata')) 'GeneData Expressionist Analyst v4.0.5' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000198)) http://www.ebi.ac.uk/swo/SWO_0000171 GSEAlm 'GSEAlm' SubClassOf 'implements' some 'Gene-Set Enrichment Analysis' 'GSEAlm' SubClassOf 'implements' some 'Linear modelling' 'GSEAlm' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Linear modelling' 'GSEAlm' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gene-Set Enrichment Analysis' http://purl.obolibrary.org/obo/IAO_0000027 data item 'data item' SubClassOf 'is encoded in' some 'data format specification' 'data item' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'data format specification' http://www.ebi.ac.uk/swo/SWO_0000594 limmaGUI 'limmaGUI' SubClassOf 'is published by' value 'Bioconductor' 'limmaGUI' SubClassOf 'implements' some 'Linear modelling' 'limmaGUI' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Linear modelling' 'limmaGUI' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000593 limma 'limma' SubClassOf 'is published by' value 'Bioconductor' 'limma' SubClassOf 'implements' some 'Linear modelling' 'limma' SubClassOf 'is developed by' value 'Walter and Eliza Hall Institute' 'limma' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000443 'limma' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'limma' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Linear modelling' http://www.ebi.ac.uk/swo/SWO_0000599 logicFS 'logicFS' SubClassOf 'implements' some 'Logic regression' 'logicFS' SubClassOf 'is published by' value 'Bioconductor' 'logicFS' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Logic regression' 'logicFS' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000590 keggorth 'keggorth' SubClassOf 'is published by' value 'Bioconductor' 'keggorth' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000591 lapmix 'lapmix' SubClassOf 'is published by' value 'Bioconductor' 'lapmix' SubClassOf 'implements' some 'Laplace mixture model' 'lapmix' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'lapmix' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Laplace mixture model' http://www.ebi.ac.uk/swo/SWO_0000133 DAVID 'DAVID' SubClassOf 'implements' some 'Gene-Set Enrichment Analysis' 'DAVID' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gene-Set Enrichment Analysis' http://www.ebi.ac.uk/swo/SWO_0000137 NONMEM 'NONMEM' SubClassOf 'is encoded in' some 'NMTRAN' 'NONMEM' SubClassOf 'implements' some 'SAEM' 'NONMEM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'NMTRAN' 'NONMEM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'SAEM' http://www.ebi.ac.uk/swo/SWO_0000145 Segway 1.2 'Segway 1.2' SubClassOf 'implements' some 'dynamic Bayesian network model' 'Segway 1.2' SubClassOf 'is encoded in' some ('Python 2.6' or 'Python 2.7') 'Segway 1.2' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'dynamic Bayesian network model' 'Segway 1.2' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some ('Python 2.6' or 'Python 2.7') http://www.ebi.ac.uk/swo/SWO_0000141 Weka 'Weka' SubClassOf 'is encoded in' some 'Java' 'Weka' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'Java' http://www.ebi.ac.uk/swo/SWO_0000550 gene2pathway 'gene2pathway' SubClassOf 'is published by' value 'Bioconductor' 'gene2pathway' SubClassOf 'implements' some 'Hierarchical clustering' 'gene2pathway' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'gene2pathway' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hierarchical clustering' http://www.ebi.ac.uk/swo/SWO_0000551 geneRecommender 'geneRecommender' SubClassOf 'implements' some 'Gene Recommender algorithm' 'geneRecommender' SubClassOf 'is published by' value 'Bioconductor' 'geneRecommender' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gene Recommender algorithm' 'geneRecommender' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000556 genemeta 'genemeta' SubClassOf 'implements' some (''t-test'' and ''FDR'' and ('Random effects model' or 'Fixed effect model')) 'genemeta' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some (''t-test'' and ''FDR'' and ('Random effects model' or 'Fixed effect model')) http://www.ebi.ac.uk/swo/SWO_0000555 genefilter 'genefilter' SubClassOf 'is published by' value 'Bioconductor' 'genefilter' SubClassOf 'implements' some 'k-nearest neighbour classification' 'genefilter' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'k-nearest neighbour classification' 'genefilter' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000558 genomeIntervals 'genomeIntervals' SubClassOf 'is published by' value 'Bioconductor' 'genomeIntervals' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000561 globaltest 'globaltest' SubClassOf 'implements' some 'globaltest' 'globaltest' SubClassOf 'is published by' value 'Bioconductor' 'globaltest' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'globaltest' 'globaltest' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000563 goProfiles 'goProfiles' SubClassOf 'implements' some 'Gene-Set Enrichment Analysis' 'goProfiles' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gene-Set Enrichment Analysis' http://www.ebi.ac.uk/swo/SWO_0000565 gpls 'gpls' SubClassOf 'is published by' value 'Bioconductor' 'gpls' SubClassOf 'implements' some 'Iteratively ReWeighted Least Squares' 'gpls' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Iteratively ReWeighted Least Squares' 'gpls' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000564 goTools 'goTools' SubClassOf 'is published by' value 'Bioconductor' 'goTools' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000567 graph 'graph' SubClassOf 'implements' some 'R interface to boost graph library algorithm (RBGL)' 'graph' SubClassOf 'is published by' value 'Bioconductor' 'graph' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'R interface to boost graph library algorithm (RBGL)' 'graph' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000572 hexbin 'hexbin' SubClassOf 'implements' some 'Hexagon binning algorithm' 'hexbin' SubClassOf 'is published by' value 'Bioconductor' 'hexbin' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'hexbin' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hexagon binning algorithm' http://www.ebi.ac.uk/swo/SWO_0000574 hopach 'hopach' SubClassOf 'implements' some 'Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) algorithm' 'hopach' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) algorithm' http://www.ebi.ac.uk/swo/SWO_0000575 HTML report 'HTML report' SubClassOf 'is encoded in' some 'HTML' 'HTML report' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'HTML' http://www.ebi.ac.uk/swo/SWO_0000577 hypergraph 'hypergraph' SubClassOf 'is published by' value 'Bioconductor' 'hypergraph' SubClassOf 'implements' some 'k-cores' 'hypergraph' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'hypergraph' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'k-cores' http://www.ebi.ac.uk/swo/SWO_0000579 idiogram 'idiogram' SubClassOf 'is published by' value 'Bioconductor' 'idiogram' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000583 iterativeBMAsurv 'iterativeBMAsurv' SubClassOf 'is published by' value 'Bioconductor' 'iterativeBMAsurv' SubClassOf 'implements' some 'Iterative Bayesian Model Averaging (BMA)' 'iterativeBMAsurv' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'iterativeBMAsurv' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Iterative Bayesian Model Averaging (BMA)' http://www.ebi.ac.uk/swo/SWO_0000582 iterativeBMA 'iterativeBMA' SubClassOf 'implements' some 'Iterative Bayesian Model Averaging (BMA)' 'iterativeBMA' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Iterative Bayesian Model Averaging (BMA)' http://www.ebi.ac.uk/swo/SWO_0000581 impute 'impute' SubClassOf 'implements' some 'k-nearest neighbour classification' 'impute' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'k-nearest neighbour classification' http://www.ebi.ac.uk/swo/SWO_0000510 crlmm 'crlmm' SubClassOf 'implements' some 'CRLMM algorithm' 'crlmm' SubClassOf 'is published by' value 'Bioconductor' 'crlmm' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'CRLMM algorithm' 'crlmm' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000512 ctc 'ctc' SubClassOf 'implements' some 'Hierarchical clustering' 'ctc' SubClassOf 'is published by' value 'Bioconductor' 'ctc' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'ctc' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hierarchical clustering' http://www.ebi.ac.uk/swo/SWO_0000514 daMA 'daMA' SubClassOf 'is published by' value 'Bioconductor' 'daMA' SubClassOf 'implements' some ('f-test' and ''FDR'') 'daMA' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('f-test' and ''FDR'') 'daMA' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000513 dChip 'dChip' SubClassOf 'is published by' value 'Havard School of Public Health' 'dChip' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_0000223 http://www.ebi.ac.uk/swo/SWO_0000521 'domainsignatures' ''domainsignatures'' SubClassOf 'implements' some 'Gene-Set Enrichment Analysis' ''domainsignatures'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gene-Set Enrichment Analysis' http://www.ebi.ac.uk/swo/SWO_0000520 'diffGeneAnalysis' ''diffGeneAnalysis'' SubClassOf 'implements' some 'Associative T method' ''diffGeneAnalysis'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Associative T method' http://www.ebi.ac.uk/swo/SWO_0000523 dyebias 'dyebias' SubClassOf 'implements' some 'GASSCO method' 'dyebias' SubClassOf 'is published by' value 'Bioconductor' 'dyebias' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'dyebias' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'GASSCO method' http://www.ebi.ac.uk/swo/SWO_0000522 'dualKS' ''dualKS'' SubClassOf 'implements' some ('Kolmogorov Smirnov rank-sum based algorithm' and 'Bootstrap') ''dualKS'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Kolmogorov Smirnov rank-sum based algorithm' and 'Bootstrap') http://www.ebi.ac.uk/swo/SWO_0000525 ecolitk 'ecolitk' SubClassOf 'is published by' value 'Bioconductor' 'ecolitk' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000527 'edgeR' ''edgeR'' SubClassOf 'implements' some ('Negative binomial distribution' and 'Empirical Bayes rule') ''edgeR'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Negative binomial distribution' and 'Empirical Bayes rule') http://www.ebi.ac.uk/swo/SWO_0000526 edd 'edd' SubClassOf 'is published by' value 'Bioconductor' 'edd' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000529 'explorase' ''explorase'' SubClassOf 'implements' some 'Linear modelling' ''explorase'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Linear modelling' http://www.ebi.ac.uk/swo/SWO_0000528 exonmap 'exonmap' SubClassOf 'implements' some ('RMA' and ''FDR'') 'exonmap' SubClassOf 'is published by' value 'Bioconductor' 'exonmap' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('RMA' and ''FDR'') 'exonmap' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000532 factDesign 'factDesign' SubClassOf 'implements' some ('RMA' and 'Linear modelling' and ''ANOVA'' and ''FDR'') 'factDesign' SubClassOf 'is published by' value 'Bioconductor' 'factDesign' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('RMA' and 'Linear modelling' and ''ANOVA'' and ''FDR'') 'factDesign' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000534 fdrame 'fdrame' SubClassOf 'is published by' value 'Bioconductor' 'fdrame' SubClassOf 'implements' some (''ANOVA'' and ''FDR'') 'fdrame' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'fdrame' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some (''ANOVA'' and ''FDR'') http://www.ebi.ac.uk/swo/SWO_0000533 fbat 'fbat' SubClassOf 'implements' some ('Hardy-Weinberg equilibrium' and 'Markov Chain Monte Carlo') 'fbat' SubClassOf 'is published by' value 'Bioconductor' 'fbat' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Hardy-Weinberg equilibrium' and 'Markov Chain Monte Carlo') 'fbat' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000536 flagme 'flagme' SubClassOf 'is published by' value 'Bioconductor' 'flagme' SubClassOf 'implements' some ('Dynamic programming algorithm' and 'AMDIS') 'flagme' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Dynamic programming algorithm' and 'AMDIS') 'flagme' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000538 flowCore 'flowCore' SubClassOf 'is published by' value 'Bioconductor' 'flowCore' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000537 flowClust 'flowClust' SubClassOf 'is published by' value 'Bioconductor' 'flowClust' SubClassOf 'implements' some ('Multivariate t mixture models' and 'Bayesian Model' and 'Expectation-Maximization(EM) algorithm') 'flowClust' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'flowClust' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Multivariate t mixture models' and 'Bayesian Model' and 'Expectation-Maximization(EM) algorithm') http://www.ebi.ac.uk/swo/SWO_0000539 flowFlowJo 'flowFlowJo' SubClassOf 'is published by' value 'Bioconductor' 'flowFlowJo' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000541 flowStats 'flowStats' SubClassOf 'is published by' value 'Bioconductor' 'flowStats' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000540 flowQ 'flowQ' SubClassOf 'is published by' value 'Bioconductor' 'flowQ' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000543 flowViz 'flowViz' SubClassOf 'is published by' value 'Bioconductor' 'flowViz' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000542 flowUtils 'flowUtils' SubClassOf 'is published by' value 'Bioconductor' 'flowUtils' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000544 gaga 'gaga' SubClassOf 'is published by' value 'Bioconductor' 'gaga' SubClassOf 'implements' some ('Gamma-Gamma hierarchical model' and ''FDR'') 'gaga' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'gaga' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Gamma-Gamma hierarchical model' and ''FDR'') http://www.ebi.ac.uk/swo/SWO_0000547 gcrma 'gcrma' SubClassOf 'is published by' value 'Bioconductor' 'gcrma' SubClassOf 'implements' some 'RMA' 'gcrma' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'gcrma' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'RMA' http://www.ebi.ac.uk/swo/SWO_0000546 gcRMA quantification 'gcRMA quantification' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Bioconductor')) 'gcRMA quantification' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200004)) http://www.ebi.ac.uk/swo/SWO_0000505 copa 'copa' SubClassOf 'implements' some ('Median Average Difference Algorithm' and ''FDR'') 'copa' SubClassOf 'is published by' value 'Bioconductor' 'copa' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Median Average Difference Algorithm' and ''FDR'') 'copa' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000504 convert 'convert' SubClassOf 'is published by' value 'Bioconductor' 'convert' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000507 cosmoGUI 'cosmoGUI' SubClassOf 'implements' some 'cosmo' 'cosmoGUI' SubClassOf 'is published by' value 'Bioconductor' 'cosmoGUI' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'cosmo' 'cosmoGUI' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000506 cosmo 'cosmo' SubClassOf 'implements' some 'Cosmo' 'cosmo' SubClassOf 'is published by' value 'Bioconductor' 'cosmo' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Cosmo' 'cosmo' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000275 MAVI Pro 'MAVI Pro' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'MWG Biotech')) 'MAVI Pro' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000286)) http://www.ebi.ac.uk/swo/SWO_0000271 MIcroarray Analysis Suite 'MIcroarray Analysis Suite' SubClassOf 'output of' some ('software development' and ('has participant' value 'Affymetrix')) 'MIcroarray Analysis Suite' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200000)) http://www.ebi.ac.uk/swo/SWO_0000288 MantelCorr 'MantelCorr' SubClassOf 'implements' some 'k-means' 'MantelCorr' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'k-means' http://www.ebi.ac.uk/swo/SWO_0000289 MassSpecWavelet 'MassSpecWavelet' SubClassOf 'implements' some 'Continuous Wavelet Transform (CWT)-based peak detection algorithm' 'MassSpecWavelet' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Continuous Wavelet Transform (CWT)-based peak detection algorithm' http://www.ebi.ac.uk/swo/SWO_0000283 MLInterfaces 'MLInterfaces' SubClassOf 'implements' some 'k-nearest neighbour classification' 'MLInterfaces' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'k-nearest neighbour classification' http://www.ebi.ac.uk/swo/SWO_0000293 MergeMaid 'MergeMaid' SubClassOf 'implements' some 'Regression model' 'MergeMaid' SubClassOf 'implements' some 'Logic regression' 'MergeMaid' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Logic regression' 'MergeMaid' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Regression model' http://www.ebi.ac.uk/swo/SWO_0000292 MeasurementError.cor 'MeasurementError.cor' SubClassOf 'implements' some 'Two-stage measurement error model' 'MeasurementError.cor' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Two-stage measurement error model' http://www.ebi.ac.uk/swo/SWO_0000295 MiPP 'MiPP' SubClassOf 'implements' some 'Misclassification-Penalized Posteriors (MiPP)' 'MiPP' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Misclassification-Penalized Posteriors (MiPP)' http://www.ebi.ac.uk/swo/SWO_0000294 Mfuzz 'Mfuzz' SubClassOf 'implements' some 'clustering algorithm' 'Mfuzz' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'clustering algorithm' http://www.ebi.ac.uk/swo/SWO_0000231 ITALICS 'ITALICS' SubClassOf 'implements' some 'AWS algorithm' 'ITALICS' SubClassOf 'implements' some 'HaarSeg algorithm' 'ITALICS' SubClassOf 'implements' some 'Modified version of the GLAD algorithm (Gain and Loss Analysis of DNA)' 'ITALICS' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'HaarSeg algorithm' 'ITALICS' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Modified version of the GLAD algorithm (Gain and Loss Analysis of DNA)' 'ITALICS' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'AWS algorithm' http://www.ebi.ac.uk/swo/SWO_0000236 ImageQuant 'ImageQuant' SubClassOf 'output of' some ('software development' and ('has participant' value 'Molecular Dynamics')) 'ImageQuant' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200013)) http://www.ebi.ac.uk/swo/SWO_0000238 ImaGene 'ImaGene' SubClassOf 'output of' some ('software development' and ('has participant' value 'Bio Discovery')) 'ImaGene' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200003)) http://www.ebi.ac.uk/swo/SWO_0000241 Initial microarray data processing (data filtering, local normalisation and quality control) 'Initial microarray data processing (data filtering, local normalisation and quality control)' SubClassOf 'output of' some ('software development' and ('has participant' value 'Bahler Lab')) 'Initial microarray data processing (data filtering, local normalisation and quality control)' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200001)) http://www.ebi.ac.uk/swo/SWO_0000246 KCsmart 'KCsmart' SubClassOf 'implements' some 'Gaussian locally weighted regression' 'KCsmart' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gaussian locally weighted regression' http://www.ebi.ac.uk/swo/SWO_0000245 Jaguar 'Jaguar' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Affymetrix')) 'Jaguar' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200000)) http://www.ebi.ac.uk/swo/SWO_0000248 KEGGgraph 'KEGGgraph' SubClassOf 'implements' some 'R interface to boost graph library algorithm (RBGL)' 'KEGGgraph' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'R interface to boost graph library algorithm (RBGL)' http://www.ebi.ac.uk/swo/SWO_0000252 LBE 'LBE' SubClassOf 'implements' some ''FDR'' 'LBE' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' http://www.ebi.ac.uk/swo/SWO_0000254 LMGene 'LMGene' SubClassOf 'implements' some 'Linear modelling' 'LMGene' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Linear modelling' http://www.ebi.ac.uk/swo/SWO_0000259 LPEadj 'LPEadj' SubClassOf 'implements' some 'Local-pooled-error' 'LPEadj' SubClassOf 'implements' some ''FDR'' 'LPEadj' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Local-pooled-error' 'LPEadj' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' http://www.ebi.ac.uk/swo/SWO_0000258 LPE 'LPE' SubClassOf 'implements' some 'Local-pooled-error' 'LPE' SubClassOf 'implements' some ''FDR'' 'LPE' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Local-pooled-error' 'LPE' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' http://www.ebi.ac.uk/swo/SWO_0000269 MANOR 'MANOR' SubClassOf 'implements' some 'HaarSeg algorithm' 'MANOR' SubClassOf 'implements' some 'AWS algorithm' 'MANOR' SubClassOf 'implements' some 'Modified version of the GLAD algorithm (Gain and Loss Analysis of DNA)' 'MANOR' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'AWS algorithm' 'MANOR' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'HaarSeg algorithm' 'MANOR' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Modified version of the GLAD algorithm (Gain and Loss Analysis of DNA)' http://www.ebi.ac.uk/swo/SWO_0000671 qpcrNorm 'qpcrNorm' SubClassOf 'implements' some ('Quantile normalization' and 'Rank-invariant set normalization') 'qpcrNorm' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Quantile normalization' and 'Rank-invariant set normalization') http://www.ebi.ac.uk/swo/SWO_0000672 qpgraph 'qpgraph' SubClassOf 'is published by' value 'Bioconductor' 'qpgraph' SubClassOf 'implements' some ('Pearson correlation estimator' and 'AvgNRRs') 'qpgraph' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Pearson correlation estimator' and 'AvgNRRs') 'qpgraph' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000677 rHVDM 'rHVDM' SubClassOf 'implements' some 'Hidden Variable Dynamic Modelling HVDM)' 'rHVDM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hidden Variable Dynamic Modelling HVDM)' http://www.ebi.ac.uk/swo/SWO_0000676 qvalue 'qvalue' SubClassOf 'implements' some ''FDR'' 'qvalue' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' http://www.ebi.ac.uk/swo/SWO_0000679 rama 'rama' SubClassOf 'implements' some ('Markov Chain Monte Carlo' and 'Bayesian Model') 'rama' SubClassOf 'is published by' value 'Bioconductor' 'rama' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Markov Chain Monte Carlo' and 'Bayesian Model') 'rama' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000678 rMAT 'rMAT' SubClassOf 'is published by' value 'Bioconductor' 'rMAT' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000683 rbsurv 'rbsurv' SubClassOf 'is published by' value 'Bioconductor' 'rbsurv' SubClassOf 'implements' some 'Robust likelihood-based survival modeling' 'rbsurv' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'rbsurv' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Robust likelihood-based survival modeling' http://www.ebi.ac.uk/swo/SWO_0000686 rflowcyt 'rflowcyt' SubClassOf 'is published by' value 'Bioconductor' 'rflowcyt' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000201 GeneticsBase 'GeneticsBase' SubClassOf 'is published by' value 'Bioconductor' 'GeneticsBase' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000688 rsbml 'rsbml' SubClassOf 'is published by' value 'Bioconductor' 'rsbml' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000203 GeneticsPed 'GeneticsPed' SubClassOf 'implements' some 'Mixed model equations' 'GeneticsPed' SubClassOf 'is published by' value 'Bioconductor' 'GeneticsPed' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'GeneticsPed' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Mixed model equations' http://www.ebi.ac.uk/swo/SWO_0000206 GlobalAncova 'GlobalAncova' SubClassOf 'implements' some 'ANCOVA' 'GlobalAncova' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'ANCOVA' http://www.ebi.ac.uk/swo/SWO_0000689 rtracklayer 'rtracklayer' SubClassOf 'is published by' value 'Bioconductor' 'rtracklayer' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000208 GraphAT 'GraphAT' SubClassOf 'implements' some 'k-means' 'GraphAT' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'k-means' http://www.ebi.ac.uk/swo/SWO_0000207 GOSemSim 'GOSemSim' SubClassOf 'implements' some 'Semantic Similarity Measures' 'GOSemSim' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Semantic Similarity Measures' http://www.ebi.ac.uk/swo/SWO_0000209 GraphAlignment 'GraphAlignment' SubClassOf 'implements' some 'Bayesian Model' 'GraphAlignment' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Bayesian Model' http://www.ebi.ac.uk/swo/SWO_0000692 seqLogo 'seqLogo' SubClassOf 'is published by' value 'Bioconductor' 'seqLogo' SubClassOf 'implements' some 'Position weight matrix (PWM )' 'seqLogo' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Position weight matrix (PWM )' 'seqLogo' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000210 GridGrinder 'GridGrinder' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Grid grinder')) 'GridGrinder' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000211)) http://www.ebi.ac.uk/swo/SWO_0000694 siggenes 'siggenes' SubClassOf 'implements' some ('SAM' and 'Empirical Bayes rule' and ''FDR'') 'siggenes' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('SAM' and 'Empirical Bayes rule' and ''FDR'') http://www.ebi.ac.uk/swo/SWO_0000213 HELP 'HELP' SubClassOf 'implements' some ('RMA' and 'k-nearest neighbour classification') 'HELP' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('RMA' and 'k-nearest neighbour classification') http://www.ebi.ac.uk/swo/SWO_0000697 simulatorAPMS 'simulatorAPMS' SubClassOf 'implements' some 'Complex Estimation Algorithm' 'simulatorAPMS' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Complex Estimation Algorithm' http://www.ebi.ac.uk/swo/SWO_0000696 simpleaffy 'simpleaffy' SubClassOf 'implements' some ('RMA' and ''MAS5'') 'simpleaffy' SubClassOf 'is published by' value 'Bioconductor' 'simpleaffy' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'simpleaffy' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('RMA' and ''MAS5'') http://www.ebi.ac.uk/swo/SWO_0000699 xmapbridge 'xmapbridge' SubClassOf 'is published by' value 'Bioconductor' 'xmapbridge' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000214 HEM 'HEM' SubClassOf 'implements' some 'Empirical Bayes rule' 'HEM' SubClassOf 'implements' some 'Heterogeneous Error Model (HEM)' 'HEM' SubClassOf 'implements' some ''FDR'' 'HEM' SubClassOf 'implements' some 'Markov Chain Monte Carlo' 'HEM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Heterogeneous Error Model (HEM)' 'HEM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' 'HEM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Empirical Bayes rule' 'HEM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Markov Chain Monte Carlo' http://www.ebi.ac.uk/swo/SWO_0000698 sizepower 'sizepower' SubClassOf 'is published by' value 'Bioconductor' 'sizepower' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000691 sagenhaft 'sagenhaft' SubClassOf 'is published by' value 'Bioconductor' 'sagenhaft' SubClassOf 'implements' some 'Serial Analysis of Gene Expression (SAGE)' 'sagenhaft' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Serial Analysis of Gene Expression (SAGE)' 'sagenhaft' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000690 safe 'safe' SubClassOf 'implements' some ('Bootstrap' and 'Global test' and ''t-test'' and ''ANOVA'') 'safe' SubClassOf 'is published by' value 'Bioconductor' 'safe' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'safe' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Bootstrap' and 'Global test' and ''t-test'' and ''ANOVA'') http://www.ebi.ac.uk/swo/SWO_0000222 Harshlight 'Harshlight' SubClassOf 'implements' some 'RMA' 'Harshlight' SubClassOf 'implements' some ''MAS5'' 'Harshlight' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''MAS5'' 'Harshlight' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'RMA' http://www.ebi.ac.uk/swo/SWO_0000228 ICS-501 (version 2.3) Image Capture System 'ICS-501 (version 2.3) Image Capture System' SubClassOf 'output of' some ('software development' and ('has participant' value 'Genicon Sciences')) 'ICS-501 (version 2.3) Image Capture System' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000204)) http://www.ebi.ac.uk/swo/SWO_0000630 multtest 'multtest' SubClassOf 'is published by' value 'Bioconductor' 'multtest' SubClassOf 'implements' some 'Multiple testing' 'multtest' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Multiple testing' 'multtest' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000632 nem 'nem' SubClassOf 'implements' some 'Nested Effects Models' 'nem' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Nested Effects Models' http://www.ebi.ac.uk/swo/SWO_0000635 nnNorm 'nnNorm' SubClassOf 'is published by' value 'Bioconductor' 'nnNorm' SubClassOf 'implements' some 'Neural networks models' 'nnNorm' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'nnNorm' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Neural networks models' http://www.ebi.ac.uk/swo/SWO_0000637 occugene 'occugene' SubClassOf 'implements' some 'Markov Chain Monte Carlo' 'occugene' SubClassOf 'is published by' value 'Bioconductor' 'occugene' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Markov Chain Monte Carlo' 'occugene' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000636 nudge 'nudge' SubClassOf 'implements' some 'Expectation-Maximization(EM) algorithm' 'nudge' SubClassOf 'is published by' value 'Bioconductor' 'nudge' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'nudge' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Expectation-Maximization(EM) algorithm' http://www.ebi.ac.uk/swo/SWO_0000638 oligo 'oligo' SubClassOf 'implements' some ('SNPRMA algorithm' and 'CRLMM algorithm') 'oligo' SubClassOf 'is published by' value 'Bioconductor' 'oligo' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'oligo' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('SNPRMA algorithm' and 'CRLMM algorithm') http://www.ebi.ac.uk/swo/SWO_0000642 ontoTools 'ontoTools' SubClassOf 'is published by' value 'Bioconductor' 'ontoTools' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000641 oneChannelGUI 'oneChannelGUI' SubClassOf 'implements' some ('Regression model' and 'RMA' and 'SAM' and ''FDR'') 'oneChannelGUI' SubClassOf 'is published by' value 'Bioconductor' 'oneChannelGUI' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Regression model' and 'RMA' and 'SAM' and ''FDR'') 'oneChannelGUI' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000646 panp 'panp' SubClassOf 'is published by' value 'Bioconductor' 'panp' SubClassOf 'implements' some 'Presence-Absence calls with Negative Probesets (PANP)' 'panp' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Presence-Absence calls with Negative Probesets (PANP)' 'panp' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000645 pamr 'pamr' SubClassOf 'implements' some ''ANOVA'' 'pamr' SubClassOf 'is published by' value 'Bioconductor' 'pamr' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'pamr' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''ANOVA'' http://www.ebi.ac.uk/swo/SWO_0000647 parody 'parody' SubClassOf 'is published by' value 'Bioconductor' 'parody' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000651 pcot2 'pcot2' SubClassOf 'is published by' value 'Bioconductor' 'pcot2' SubClassOf 'implements' some ''FDR'' 'pcot2' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' 'pcot2' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000650 pcaMethods 'pcaMethods' SubClassOf 'is published by' value 'Bioconductor' 'pcaMethods' SubClassOf 'implements' some ('Nonlinear Estimation by Iterative Partial Least Squares' and 'SVDimpute algorithm' and 'Bayesian Model' and 'Expectation-Maximization(EM) algorithm') 'pcaMethods' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Nonlinear Estimation by Iterative Partial Least Squares' and 'SVDimpute algorithm' and 'Bayesian Model' and 'Expectation-Maximization(EM) algorithm') 'pcaMethods' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000653 pdInfoBuilder 'pdInfoBuilder' SubClassOf 'is published by' value 'Bioconductor' 'pdInfoBuilder' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000654 pdmclass 'pdmclass' SubClassOf 'implements' some 'Regression model' 'pdmclass' SubClassOf 'is published by' value 'Bioconductor' 'pdmclass' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'pdmclass' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Regression model' http://www.ebi.ac.uk/swo/SWO_0000657 pickgene 'pickgene' SubClassOf 'is published by' value 'Bioconductor' 'pickgene' SubClassOf 'implements' some ('Median Average Difference Algorithm' and 'Gene array analysis algorithm') 'pickgene' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'pickgene' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Median Average Difference Algorithm' and 'Gene array analysis algorithm') http://www.ebi.ac.uk/swo/SWO_0000656 pgUtils 'pgUtils' SubClassOf 'is published by' value 'Bioconductor' 'pgUtils' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000659 plgem 'plgem' SubClassOf 'implements' some 'Power Law Global Error Model (PLGEM) analysis method' 'plgem' SubClassOf 'is published by' value 'Bioconductor' 'plgem' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Power Law Global Error Model (PLGEM) analysis method' 'plgem' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000658 pkgDepTools 'pkgDepTools' SubClassOf 'is published by' value 'Bioconductor' 'pkgDepTools' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000660 plier 'plier' SubClassOf 'implements' some 'PLIER (Probe Logarithmic Error Intensity Estimate) method' 'plier' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'PLIER (Probe Logarithmic Error Intensity Estimate) method' http://www.ebi.ac.uk/swo/SWO_0000662 plw 'plw' SubClassOf 'implements' some ('Locally Moderated Weighted-t (LMW) method' and 'Probe level Locally moderated Weighted median-t (PLW) method') 'plw' SubClassOf 'is published by' value 'Bioconductor' 'plw' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Locally Moderated Weighted-t (LMW) method' and 'Probe level Locally moderated Weighted median-t (PLW) method') 'plw' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000666 prada 'prada' SubClassOf 'is published by' value 'Bioconductor' 'prada' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000665 ppiStats 'ppiStats' SubClassOf 'is published by' value 'Bioconductor' 'ppiStats' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000667 preprocessCore 'preprocessCore' SubClassOf 'implements' some ''PLM'' 'preprocessCore' SubClassOf 'is published by' value 'Bioconductor' 'preprocessCore' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''PLM'' 'preprocessCore' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria 'Bilateria' SubClassOf 'Opisthokonta' 'Bilateria' SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_33208 http://www.ebi.ac.uk/swo/SWO_0000669 puma 'puma' SubClassOf 'is published by' value 'Bioconductor' 'puma' SubClassOf 'implements' some ('Propagation of uncertainty in microarray analysis' and 'RMA') 'puma' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Propagation of uncertainty in microarray analysis' and 'RMA') 'puma' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://purl.obolibrary.org/obo/GO_0003674 molecular_function 'molecular_function' SubClassOf 'process' http://www.ebi.ac.uk/swo/SWO_0000609 made4 'made4' SubClassOf 'implements' some 'clustering algorithm' 'made4' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'clustering algorithm' http://www.ebi.ac.uk/swo/SWO_0000601 logitT 'logitT' SubClassOf 'implements' some ('Logit-t algorithm' and ''t-test'') 'logitT' SubClassOf 'is published by' value 'Bioconductor' 'logitT' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'logitT' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Logit-t algorithm' and ''t-test'') http://www.ebi.ac.uk/swo/SWO_0000604 maCorrPlot 'maCorrPlot' SubClassOf 'is published by' value 'Bioconductor' 'maCorrPlot' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000603 lumi 'lumi' SubClassOf 'is published by' value 'Bioconductor' 'lumi' SubClassOf 'implements' some 'Variance-stabilizing transformation (VST) algorithm' 'lumi' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'lumi' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Variance-stabilizing transformation (VST) algorithm' http://www.ebi.ac.uk/swo/SWO_0000606 maSigPro 'maSigPro' SubClassOf 'implements' some ('Regression model' and ''FDR'') 'maSigPro' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Regression model' and ''FDR'') http://www.ebi.ac.uk/swo/SWO_0000605 maDB 'maDB' SubClassOf 'is published by' value 'Bioconductor' 'maDB' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000608 macat 'macat' SubClassOf 'implements' some ('Radial basis function' and 'k-nearest neighbour classification' and 'Base-Pair-Distance Kernel') 'macat' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Radial basis function' and 'k-nearest neighbour classification' and 'Base-Pair-Distance Kernel') http://www.ebi.ac.uk/swo/SWO_0000607 maanova 'maanova' SubClassOf 'implements' some ('Bootstrap' and ''ANOVA'' and 'F test' and ''FDR'') 'maanova' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Bootstrap' and ''ANOVA'' and 'F test' and ''FDR'') http://www.ebi.ac.uk/swo/SWO_0000611 makePlatformDesign 'makePlatformDesign' SubClassOf 'is published by' value 'Bioconductor' 'makePlatformDesign' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000610 maigesPack 'maigesPack' SubClassOf 'implements' some (''t-test'' and ''ANOVA'') 'maigesPack' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some (''t-test'' and ''ANOVA'') http://www.ebi.ac.uk/swo/SWO_0000613 marray 'marray' SubClassOf 'implements' some 'Linear modelling' 'marray' SubClassOf 'is published by' value 'Bioconductor' 'marray' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'marray' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Linear modelling' http://www.ebi.ac.uk/swo/SWO_0000612 makecdfenv 'makecdfenv' SubClassOf 'is published by' value 'Bioconductor' 'makecdfenv' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000617 mdqc 'mdqc' SubClassOf 'implements' some ('Multivariate correlation estimator' and 'clustering algorithm') 'mdqc' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Multivariate correlation estimator' and 'clustering algorithm') http://www.ebi.ac.uk/swo/SWO_0000616 matchprobes 'matchprobes' SubClassOf 'is published by' value 'Bioconductor' 'matchprobes' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000619 metaArray 'metaArray' SubClassOf 'is published by' value 'Bioconductor' 'metaArray' SubClassOf 'implements' some 'Markov Chain Monte Carlo' 'metaArray' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Markov Chain Monte Carlo' 'metaArray' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000622 miRNApath 'miRNApath' SubClassOf 'is published by' value 'Bioconductor' 'miRNApath' SubClassOf 'implements' some 'Hypergeometric enrichment' 'miRNApath' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'miRNApath' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hypergeometric enrichment' http://www.ebi.ac.uk/swo/SWO_0000621 metahdep 'metahdep' SubClassOf 'is published by' value 'Bioconductor' 'metahdep' SubClassOf 'implements' some 'Bayesian Model' 'metahdep' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Bayesian Model' 'metahdep' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000623 microRNA 'microRNA' SubClassOf 'is published by' value 'Bioconductor' 'microRNA' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000625 minet 'minet' SubClassOf 'implements' some ('mrnet algorithm' and 'ARACNE algorithm' and 'CLR algorithm') 'minet' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('mrnet algorithm' and 'ARACNE algorithm' and 'CLR algorithm') http://www.ebi.ac.uk/swo/SWO_0000390 SSPA 'SSPA' SubClassOf 'is published by' value 'Bioconductor' 'SSPA' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_1100019 'AffyExpress' ''AffyExpress'' SubClassOf 'implements' some ''ANOVA'' ''AffyExpress'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''ANOVA'' http://www.ebi.ac.uk/swo/SWO_1100004 Algorithms for Calculating Microarray Enrichment 'Algorithms for Calculating Microarray Enrichment' SubClassOf 'implements' some ('Algorithms for Calculating Microarray Enrichment' and 'Chi-square') 'Algorithms for Calculating Microarray Enrichment' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Algorithms for Calculating Microarray Enrichment' and 'Chi-square') http://www.ebi.ac.uk/swo/SWO_1100005 Affymetrix Expression Console 'Affymetrix Expression Console' SubClassOf 'implements' some 'RMA' 'Affymetrix Expression Console' SubClassOf 'implements' some 'PLIER (Probe Logarithmic Error Intensity Estimate) method' 'Affymetrix Expression Console' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Affymetrix')) 'Affymetrix Expression Console' SubClassOf 'implements' some ''MAS5'' 'Affymetrix Expression Console' SubClassOf 'output of' some ('software development' and ('has participant' value 'Affymetrix')) 'Affymetrix Expression Console' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'PLIER (Probe Logarithmic Error Intensity Estimate) method' 'Affymetrix Expression Console' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'RMA' 'Affymetrix Expression Console' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200000)) 'Affymetrix Expression Console' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200000)) 'Affymetrix Expression Console' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''MAS5'' http://www.ebi.ac.uk/swo/SWO_1100006 AIDA 'AIDA' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Raytest')) 'AIDA' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000351)) http://www.ebi.ac.uk/swo/SWO_1100001 50-50 MANOVA '50-50 MANOVA' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Matforsk')) '50-50 MANOVA' SubClassOf 'implements' some '50-50 MANOVA algorithm' '50-50 MANOVA' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some '50-50 MANOVA algorithm' '50-50 MANOVA' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000290)) http://www.ebi.ac.uk/swo/SWO_1100002 ABarray 'ABarray' SubClassOf 'implements' some 'Local-pooled-error' 'ABarray' SubClassOf 'implements' some ''FDR'' 'ABarray' SubClassOf 'implements' some ''t-test'' 'ABarray' SubClassOf 'implements' some ''ANOVA'' 'ABarray' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' 'ABarray' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''t-test'' 'ABarray' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''ANOVA'' 'ABarray' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Local-pooled-error' http://www.ebi.ac.uk/swo/SWO_1100031 'BGmix' ''BGmix'' SubClassOf 'implements' some 'Markov Chain Monte Carlo' ''BGmix'' SubClassOf 'implements' some 'Bayesian Model' ''BGmix'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Bayesian Model' ''BGmix'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Markov Chain Monte Carlo' http://www.ebi.ac.uk/swo/SWO_1100036 BRB-ArrayTools 'BRB-ArrayTools' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Biometric Research Branch')) 'BRB-ArrayTools' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200005)) http://www.ebi.ac.uk/swo/SWO_1100038 BZScan 'BZScan' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Technological Advances for Genomics and Clinics, France')) 'BZScan' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000436)) http://www.ebi.ac.uk/swo/SWO_1100032 BLAST 'BLAST' SubClassOf 'output of' some ('software development' and ('has participant' value 'NIH')) 'BLAST' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'NIH')) 'BLAST' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000303)) 'BLAST' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000303)) http://www.ebi.ac.uk/swo/SWO_1100035 BPMAP 'BPMAP' SubClassOf 'is published by' value 'Affymetrix' 'BPMAP' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200000 http://www.ebi.ac.uk/swo/SWO_1100021 Affymetrix GeneChip Operating Software 'Affymetrix GeneChip Operating Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Affymetrix')) 'Affymetrix GeneChip Operating Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200000)) http://www.ebi.ac.uk/swo/SWO_1100022 Affymetrix Software 'Affymetrix Software' EquivalentTo 'software' and ('is published by' value 'Affymetrix') 'Affymetrix Software' EquivalentTo 'software' and ('is published by' value http://www.ebi.ac.uk/swo/SWO_1200000) http://www.ebi.ac.uk/swo/SWO_1100023 Agi4x44PreProcess 'Agi4x44PreProcess' SubClassOf 'implements' some 'Loess algorithm' 'Agi4x44PreProcess' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Loess algorithm' http://www.ebi.ac.uk/swo/SWO_1100029 'BCRANK' ''BCRANK'' SubClassOf 'implements' some ''BCRANK'' ''BCRANK'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''BCRANK'' http://www.ebi.ac.uk/swo/SWO_0000354 RdbiPgSQL 'RdbiPgSQL' SubClassOf 'is published by' value 'Bioconductor' 'RdbiPgSQL' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000353 Rdbi 'Rdbi' SubClassOf 'is published by' value 'Bioconductor' 'Rdbi' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000355 Rdisop 'Rdisop' SubClassOf 'is published by' value 'Bioconductor' 'Rdisop' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_1100054 CDF binary format 'CDF binary format' SubClassOf 'is published by' value 'Affymetrix' 'CDF binary format' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200000 http://www.ebi.ac.uk/swo/SWO_1100055 'CMA' ''CMA'' SubClassOf 'implements' some ''CMA'' ''CMA'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''CMA'' http://www.ebi.ac.uk/swo/SWO_0000350 RankProd 'RankProd' SubClassOf 'implements' some 'Rank product non-parametric method' 'RankProd' SubClassOf 'is published by' value 'Bioconductor' 'RankProd' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'RankProd' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Rank product non-parametric method' http://www.ebi.ac.uk/swo/SWO_0000359 Rgraphviz 'Rgraphviz' SubClassOf 'is published by' value 'Bioconductor' 'Rgraphviz' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000362 Rmagpie 'Rmagpie' SubClassOf 'implements' some 'Recursive Feature Elimination (RFE)' 'Rmagpie' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Recursive Feature Elimination (RFE)' http://www.ebi.ac.uk/swo/SWO_1100040 BasReader 3.01 'BasReader 3.01' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Raytest')) 'BasReader 3.01' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000351)) http://www.ebi.ac.uk/swo/SWO_0000365 Rosetta Resolver 'Rosetta Resolver' SubClassOf 'is developed by' value 'Rosetta Biosoftware' 'Rosetta Resolver' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000366 http://www.ebi.ac.uk/swo/SWO_1100042 Beadstudio 'Beadstudio' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Illumina')) 'Beadstudio' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000232)) http://www.ebi.ac.uk/swo/SWO_0000367 RpsiXML 'RpsiXML' SubClassOf 'is published by' value 'Bioconductor' 'RpsiXML' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000369 Rtreemix 'Rtreemix' SubClassOf 'implements' some ('Likelihood method' or 'Sim method') 'Rtreemix' SubClassOf 'is published by' value 'Bioconductor' 'Rtreemix' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Likelihood method' or 'Sim method') 'Rtreemix' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000368 Rredland 'Rredland' SubClassOf 'is published by' value 'Bioconductor' 'Rredland' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_1100047 BioConductor Software 'BioConductor Software' EquivalentTo 'software' and ('is published by' value 'Bioconductor') 'BioConductor Software' EquivalentTo 'software' and ('is published by' value http://www.ebi.ac.uk/swo/SWO_1200004) http://www.ebi.ac.uk/swo/SWO_1100048 'Biostrings' ''Biostrings'' SubClassOf 'implements' some ''Needleman-Wunsch'' ''Biostrings'' SubClassOf 'implements' some ''Smith-Waterman'' ''Biostrings'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''Smith-Waterman'' ''Biostrings'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''Needleman-Wunsch'' http://www.ebi.ac.uk/swo/SWO_1100049 BlueFuse 'BlueFuse' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Cambridge Bluegnome')) 'BlueFuse' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000492)) http://www.ebi.ac.uk/swo/SWO_0000361 Rintact 'Rintact' SubClassOf 'is published by' value 'Bioconductor' 'Rintact' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000360 Ringo 'Ringo' SubClassOf 'is published by' value 'Bioconductor' 'Ringo' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000373 SAGx 'SAGx' SubClassOf 'is published by' value 'Bioconductor' 'SAGx' SubClassOf 'implements' some ('Linear modelling' and ''t-test'') 'SAGx' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Linear modelling' and ''t-test'') 'SAGx' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_1100073 Annotation-Driven Clustering 'Annotation-Driven Clustering' SubClassOf 'implements' some 'k-means' 'Annotation-Driven Clustering' SubClassOf 'implements' some ''FDR'' 'Annotation-Driven Clustering' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'k-means' 'Annotation-Driven Clustering' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' http://www.ebi.ac.uk/swo/SWO_1100075 R software 'R software' EquivalentTo 'is encoded in' some 'R language' 'R software' SubClassOf 'is encoded in' some 'R language' 'R software' EquivalentTo http://www.ebi.ac.uk/swo/SWO_0000741 some 'R language' 'R software' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'R language' http://www.ebi.ac.uk/swo/SWO_0000375 SAS/STAT Software, Version 8 'SAS/STAT Software, Version 8' SubClassOf 'is developed by' value 'SAS Institute Inc.' 'SAS/STAT Software, Version 8' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000376 http://www.ebi.ac.uk/swo/SWO_0000377 SBMLR 'SBMLR' SubClassOf 'is published by' value 'Bioconductor' 'SBMLR' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000370 Ruuid 'Ruuid' SubClassOf 'is published by' value 'Bioconductor' 'Ruuid' SubClassOf 'implements' some 'Theodore Ts’o’s' 'Ruuid' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'Ruuid' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Theodore Ts’o’s' http://www.ebi.ac.uk/swo/SWO_0000385 SMAP 'SMAP' SubClassOf 'is published by' value 'Bioconductor' 'SMAP' SubClassOf 'implements' some 'Hidden Markov Model' 'SMAP' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'SMAP' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hidden Markov Model' http://www.ebi.ac.uk/swo/SWO_0000384 SLqPCR 'SLqPCR' SubClassOf 'is published by' value 'Bioconductor' 'SLqPCR' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_1100062 Category 'Category' SubClassOf 'implements' some 'Category analysis' 'Category' SubClassOf 'is published by' value 'Bioconductor' 'Category' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Category analysis' 'Category' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000387 SNPchip 'SNPchip' SubClassOf 'is published by' value 'Bioconductor' 'SNPchip' SubClassOf 'implements' some 'Hidden Markov Model' 'SNPchip' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hidden Markov Model' 'SNPchip' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_1100063 'ChemmineR' ''ChemmineR'' SubClassOf 'implements' some 'Binning clustering method' ''ChemmineR'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Binning clustering method' http://www.ebi.ac.uk/swo/SWO_1100064 ChipReader 3.1 'ChipReader 3.1' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Bio-Rad Laboratories, Inc.')) 'ChipReader 3.1' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200002)) http://www.ebi.ac.uk/swo/SWO_0000388 SPIA 'SPIA' SubClassOf 'is published by' value 'Bioconductor' 'SPIA' SubClassOf 'implements' some 'Signaling Pathway Impact Analysis (SPIA) algorithm' 'SPIA' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Signaling Pathway Impact Analysis (SPIA) algorithm' 'SPIA' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_1100060 CARMAweb 'CARMAweb' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Institute for Genomics and Bioinformatics Graz University of Technology')) 'CARMAweb' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000242)) http://www.ebi.ac.uk/swo/SWO_1100069 affycomp 'affycomp' SubClassOf 'implements' some ('RMA' and ''MAS5'') 'affycomp' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('RMA' and ''MAS5'') http://www.ebi.ac.uk/swo/SWO_1100065 ChipSkipper 'ChipSkipper' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'EMBL')) 'ChipSkipper' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200009)) http://www.ebi.ac.uk/swo/SWO_0000383 SLGI 'SLGI' SubClassOf 'is published by' value 'Bioconductor' 'SLGI' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_1100067 multiscan 'multiscan' SubClassOf 'implements' some 'Non-linear functional regression model' 'multiscan' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Non-linear functional regression model' http://www.ebi.ac.uk/swo/SWO_0000382 SIM 'SIM' SubClassOf 'implements' some 'Global test' 'SIM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Global test' http://www.ebi.ac.uk/swo/SWO_1100068 affy 'affy' SubClassOf 'implements' some ('RMA' and ''MAS5'') 'affy' SubClassOf 'is published by' value 'Bioconductor' 'affy' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'affy' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('RMA' and ''MAS5'') http://www.ebi.ac.uk/swo/SWO_1100095 'EBarrays' ''EBarrays'' SubClassOf 'implements' some 'Lognormal Normal with Modied Variance Model' ''EBarrays'' SubClassOf 'implements' some 'Empirical Bayes rule' ''EBarrays'' SubClassOf 'implements' some 'Gamma Gamma Model' ''EBarrays'' SubClassOf 'implements' some 'Lognormal Normal Model' ''EBarrays'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gamma Gamma Model' ''EBarrays'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Lognormal Normal Model' ''EBarrays'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Empirical Bayes rule' ''EBarrays'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Lognormal Normal with Modied Variance Model' http://www.ebi.ac.uk/swo/SWO_0000310 Optiquant 'Optiquant' SubClassOf 'output of' some ('software development' and ('has participant' value 'PerkinElmer')) 'Optiquant' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000325)) http://www.ebi.ac.uk/swo/SWO_0000312 OutlierD 'OutlierD' SubClassOf 'implements' some 'Quantile regression techniques' 'OutlierD' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Quantile regression techniques' http://www.ebi.ac.uk/swo/SWO_0000311 OrderedList 'OrderedList' SubClassOf 'implements' some 'Similarity score' 'OrderedList' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Similarity score' http://www.ebi.ac.uk/swo/SWO_0000316 PCpheno 'PCpheno' SubClassOf 'implements' some 'Global test' 'PCpheno' SubClassOf 'implements' some 'Hypergeometric enrichment' 'PCpheno' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hypergeometric enrichment' 'PCpheno' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Global test' http://www.ebi.ac.uk/swo/SWO_0000319 PLPE 'PLPE' SubClassOf 'implements' some 'Statistical tests' 'PLPE' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Statistical tests' http://www.ebi.ac.uk/swo/SWO_1100083 'CoCiteStats' ''CoCiteStats'' SubClassOf 'implements' some 'Concordance' ''CoCiteStats'' SubClassOf 'implements' some 'Hubert’s gamma' ''CoCiteStats'' SubClassOf 'implements' some 'Jaccard’s index' ''CoCiteStats'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Jaccard’s index' ''CoCiteStats'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Concordance' ''CoCiteStats'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hubert’s gamma' http://www.ebi.ac.uk/swo/SWO_1100084 CodeLink Expression Analysis Software 'CodeLink Expression Analysis Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Motorola Life Sciences')) 'CodeLink Expression Analysis Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000302)) http://www.ebi.ac.uk/swo/SWO_1100085 CodeLink Expression Scanning Software 'CodeLink Expression Scanning Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Motorola Life Sciences')) 'CodeLink Expression Scanning Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000302)) http://www.ebi.ac.uk/swo/SWO_0000322 PROcess 'PROcess' SubClassOf 'implements' some 'k-nearest neighbour classification' 'PROcess' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'k-nearest neighbour classification' http://www.ebi.ac.uk/swo/SWO_0000324 Pathways 2.01 software 'Pathways 2.01 software' SubClassOf 'output of' some ('software development' and ('has participant' value 'Research Genetics')) 'Pathways 2.01 software' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000357)) http://www.ebi.ac.uk/swo/SWO_1100087 Cyber-T 'Cyber-T' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'UC Irvine')) 'Cyber-T' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000439)) http://www.ebi.ac.uk/swo/SWO_1100088 'DEDS' ''DEDS'' SubClassOf 'implements' some ''FDR'' ''DEDS'' SubClassOf 'implements' some ''t-test'' ''DEDS'' SubClassOf 'implements' some 'SAM' ''DEDS'' SubClassOf 'implements' some 'FC' ''DEDS'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' ''DEDS'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'SAM' ''DEDS'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'FC' ''DEDS'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''t-test'' http://www.ebi.ac.uk/swo/SWO_1100089 'DFP' ''DFP'' SubClassOf 'implements' some 'Discriminant Fuzzy Pattern Algorithm' ''DFP'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Discriminant Fuzzy Pattern Algorithm' http://www.ebi.ac.uk/swo/SWO_0000329 QuantArray scanner software 'QuantArray scanner software' SubClassOf 'output of' some ('software development' and ('has participant' value 'PerkinElmer')) 'QuantArray scanner software' SubClassOf 'output of' some ('software development' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000325)) http://www.ebi.ac.uk/swo/SWO_0000333 RBGL 'RBGL' SubClassOf 'implements' some 'BGL' 'RBGL' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'BGL' http://www.ebi.ac.uk/swo/SWO_0000335 RBioinf 'RBioinf' SubClassOf 'implements' some 'Linear modelling' 'RBioinf' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Linear modelling' http://www.ebi.ac.uk/swo/SWO_0000338 RLMM 'RLMM' SubClassOf 'is published by' value 'Bioconductor' 'RLMM' SubClassOf 'implements' some 'Mahalanobis distance' 'RLMM' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'RLMM' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Mahalanobis distance' http://www.ebi.ac.uk/swo/SWO_0000343 RMAExpress 'RMAExpress' SubClassOf 'is developed by' value 'University Of California, Berkeley' 'RMAExpress' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000440 http://www.ebi.ac.uk/swo/SWO_0000347 RNAither 'RNAither' SubClassOf 'implements' some 'Gene-Set Enrichment Analysis' 'RNAither' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gene-Set Enrichment Analysis' http://www.ebi.ac.uk/swo/SWO_0000346 RMAGEML 'RMAGEML' SubClassOf 'is published by' value 'Bioconductor' 'RMAGEML' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000349 RWebServices 'RWebServices' SubClassOf 'is published by' value 'Bioconductor' 'RWebServices' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000348 ROC 'ROC' SubClassOf 'is published by' value 'Bioconductor' 'ROC' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000307 OCplus 'OCplus' SubClassOf 'implements' some ''FDR'' 'OCplus' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' http://www.ebi.ac.uk/swo/SWO_0000309 OLINgui 'OLINgui' SubClassOf 'implements' some 'Iterative local regression and model selection' 'OLINgui' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Iterative local regression and model selection' http://www.ebi.ac.uk/swo/SWO_0000308 OLIN 'OLIN' SubClassOf 'implements' some 'Iterative local regression and model selection' 'OLIN' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Iterative local regression and model selection' http://www.ebi.ac.uk/swo/SWO_0000710 sscore 'sscore' SubClassOf 'is published by' value 'Bioconductor' 'sscore' SubClassOf 'implements' some 'S-Score algorithm' 'sscore' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'sscore' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'S-Score algorithm' http://www.ebi.ac.uk/swo/SWO_0000719 topGO 'topGO' SubClassOf 'implements' some 'Kolmogorov Smirnov rank-sum based algorithm' 'topGO' SubClassOf 'is published by' value 'Bioconductor' 'topGO' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Kolmogorov Smirnov rank-sum based algorithm' 'topGO' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000711 ssize 'ssize' SubClassOf 'implements' some 'RMA' 'ssize' SubClassOf 'is published by' value 'Bioconductor' 'ssize' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'RMA' 'ssize' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000716 tilingArray 'tilingArray' SubClassOf 'is published by' value 'Bioconductor' 'tilingArray' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000717 timecourse 'timecourse' SubClassOf 'implements' some 'RMA' 'timecourse' SubClassOf 'is published by' value 'Bioconductor' 'timecourse' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'timecourse' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'RMA' http://www.ebi.ac.uk/swo/SWO_0000721 twilight 'twilight' SubClassOf 'implements' some ('Pearson correlation estimator' and ''t-test'') 'twilight' SubClassOf 'is published by' value 'Bioconductor' 'twilight' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'twilight' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Pearson correlation estimator' and ''t-test'') http://www.ebi.ac.uk/swo/SWO_0000720 tspair 'tspair' SubClassOf 'is published by' value 'Bioconductor' 'tspair' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_9000092 EMBOSS package 'EMBOSS package' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'EMBL')) 'EMBOSS package' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200009)) http://www.ebi.ac.uk/swo/SWO_0000723 vbmp 'vbmp' SubClassOf 'implements' some 'Multinomial probit regression with Gaussian Process priors' 'vbmp' SubClassOf 'is published by' value 'Bioconductor' 'vbmp' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Multinomial probit regression with Gaussian Process priors' 'vbmp' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000727 webbioc 'webbioc' SubClassOf 'implements' some 'Multiple testing' 'webbioc' SubClassOf 'is published by' value 'Bioconductor' 'webbioc' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Multiple testing' 'webbioc' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000726 weaver 'weaver' SubClassOf 'is published by' value 'Bioconductor' 'weaver' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000729 xcms 'xcms' SubClassOf 'is published by' value 'Bioconductor' 'xcms' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000730 xps 'xps' SubClassOf 'implements' some ('RMA' and ''MAS5'' and 'DFW' and 'FARMS') 'xps' SubClassOf 'is published by' value 'Bioconductor' 'xps' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('RMA' and ''MAS5'' and 'DFW' and 'FARMS') 'xps' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000701 snpMatrix 'snpMatrix' SubClassOf 'is published by' value 'Bioconductor' 'snpMatrix' SubClassOf 'implements' some 'Chi-square' 'snpMatrix' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'snpMatrix' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Chi-square' http://www.ebi.ac.uk/swo/SWO_0000700 snapCGH 'snapCGH' SubClassOf 'implements' some 'Hidden Markov Model' 'snapCGH' SubClassOf 'is published by' value 'Bioconductor' 'snapCGH' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hidden Markov Model' 'snapCGH' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000703 spikeLI 'spikeLI' SubClassOf 'implements' some 'Langmuir Isotherm' 'spikeLI' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Langmuir Isotherm' http://www.ebi.ac.uk/swo/SWO_0000705 splicegear 'splicegear' SubClassOf 'is published by' value 'Bioconductor' 'splicegear' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000704 spkTools 'spkTools' SubClassOf 'implements' some ('Average log expression across arrays (ALE)' and ''ANOVA'') 'spkTools' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Average log expression across arrays (ALE)' and ''ANOVA'') http://www.ebi.ac.uk/swo/SWO_0000707 spotSegmentation 'spotSegmentation' SubClassOf 'is published by' value 'Bioconductor' 'spotSegmentation' SubClassOf 'implements' some 'clustering algorithm' 'spotSegmentation' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'spotSegmentation' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'clustering algorithm' http://www.ebi.ac.uk/swo/SWO_0000706 splots 'splots' SubClassOf 'is published by' value 'Bioconductor' 'splots' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000078 SAM 3.5 'SAM 3.5' SubClassOf 'implements' some 'Hidden Markov Model' 'SAM 3.5' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hidden Markov Model' http://www.ebi.ac.uk/swo/SWO_0000084 CEL binary format 'CEL binary format' SubClassOf 'is published by' value 'Affymetrix' 'CEL binary format' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200000 http://www.ebi.ac.uk/swo/SWO_1100115 matlab software 'matlab software' SubClassOf 'is encoded in' some 'MATLAB language' 'matlab software' EquivalentTo 'is encoded in' some 'MATLAB language' 'matlab software' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000741 some 'MATLAB language' 'matlab software' EquivalentTo http://www.ebi.ac.uk/swo/SWO_0000741 some 'MATLAB language' http://www.ebi.ac.uk/swo/SWO_1100116 AtlasImage 'AtlasImage' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Clontech Laboratories, Inc')) 'AtlasImage' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200007)) http://www.ebi.ac.uk/swo/SWO_1100109 GEMTools 2.4 'GEMTools 2.4' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Incyte Genomics')) 'GEMTools 2.4' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000240)) http://www.ebi.ac.uk/swo/SWO_0000034 Agilent Technologies Software 'Agilent Technologies Software' EquivalentTo 'output of' some ('software publishing process' and ('has participant' value 'Agilent Technologies')) 'Agilent Technologies Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Agilent Technologies')) 'Agilent Technologies Software' EquivalentTo 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000033)) 'Agilent Technologies Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000033)) http://www.ebi.ac.uk/swo/SWO_0000037 Applied Biosystems 1700 Expression Array System Software 'Applied Biosystems 1700 Expression Array System Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Applied Biosystems')) 'Applied Biosystems 1700 Expression Array System Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000036)) http://www.ebi.ac.uk/swo/SWO_0000039 ArrayGauge 'ArrayGauge' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Fujifilm')) 'ArrayGauge' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200010)) http://www.ebi.ac.uk/swo/SWO_0000048 BAC 'BAC' SubClassOf 'implements' some 'Bayesian Model' 'BAC' SubClassOf 'is published by' value 'Bioconductor' 'BAC' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'BAC' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Bayesian Model' http://www.ebi.ac.uk/swo/SWO_0000040 ArrayNorm 'ArrayNorm' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Institute for Genomics and Bioinformatics Graz University of Technology')) 'ArrayNorm' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000242)) http://www.ebi.ac.uk/swo/SWO_1100120 'CGHcall' ''CGHcall'' SubClassOf 'implements' some 'CBS algorithm' ''CGHcall'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'CBS algorithm' http://www.ebi.ac.uk/swo/SWO_1100121 'CGHregions' ''CGHregions'' SubClassOf 'implements' some 'CBS algorithm' ''CGHregions'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'CBS algorithm' http://www.ebi.ac.uk/swo/SWO_0000042 ArrayVision 'ArrayVision' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'GE Healthcare Life Sciences')) 'ArrayVision' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200011)) http://www.ebi.ac.uk/swo/SWO_1100122 CHP binary format 'CHP binary format' SubClassOf 'is published by' value 'Affymetrix' 'CHP binary format' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200000 http://www.ebi.ac.uk/swo/SWO_0000041 'ArrayTools' ''ArrayTools'' SubClassOf 'implements' some 'RMA' ''ArrayTools'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'RMA' http://www.ebi.ac.uk/swo/SWO_0000472 arrayMvout 'arrayMvout' SubClassOf 'is published by' value 'Bioconductor' 'arrayMvout' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000474 arrayQualityMetrics 'arrayQualityMetrics' SubClassOf 'is published by' value 'Bioconductor' 'arrayQualityMetrics' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000476 arrayWoRx 'arrayWoRx' SubClassOf 'is published by' value 'Applied Precision Life Science' 'arrayWoRx' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_0000038 http://www.ebi.ac.uk/swo/SWO_0000471 aroma.light 'aroma.light' SubClassOf 'is published by' value 'Bioconductor' 'aroma.light' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000470 'apComplex' ''apComplex'' SubClassOf 'implements' some 'PCMG' ''apComplex'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'PCMG' http://www.ebi.ac.uk/swo/SWO_0000483 bgx 'bgx' SubClassOf 'is published by' value 'Bioconductor' 'bgx' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000485 bioDist 'bioDist' SubClassOf 'implements' some (''KLD'' and ''MI'') 'bioDist' SubClassOf 'is published by' value 'Bioconductor' 'bioDist' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'bioDist' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some (''KLD'' and ''MI'') http://www.ebi.ac.uk/swo/SWO_0000489 biomaRT 'biomaRT' SubClassOf 'is published by' value 'Bioconductor' 'biomaRT' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000482 bgafun 'bgafun' SubClassOf 'is published by' value 'Bioconductor' 'bgafun' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000481 'betr' ''betr'' SubClassOf 'is published by' value 'Bioconductor' ''betr'' SubClassOf 'implements' some 'Bayesian Model' ''betr'' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 ''betr'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Bayesian Model' http://www.ebi.ac.uk/swo/SWO_0000013 COPASI 'COPASI' SubClassOf 'implements' some 'ODE Algorithm' 'COPASI' SubClassOf 'implements' some 'Gillespie's Stochastic Simulation Algorithm' 'COPASI' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'ODE Algorithm' 'COPASI' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Gillespie's Stochastic Simulation Algorithm' http://www.ebi.ac.uk/swo/SWO_0000496 cghMCR 'cghMCR' SubClassOf 'is published by' value 'Bioconductor' 'cghMCR' SubClassOf 'implements' some 'MCR algorithm' 'cghMCR' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'cghMCR' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'MCR algorithm' http://www.ebi.ac.uk/swo/SWO_0000499 'clusterStab' ''clusterStab'' SubClassOf 'implements' some 'Hierarchical clustering' ''clusterStab'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hierarchical clustering' http://www.ebi.ac.uk/swo/SWO_0000491 'bridge' ''bridge'' SubClassOf 'implements' some ('Markov Chain Monte Carlo' and 'Bayesian Model') ''bridge'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Markov Chain Monte Carlo' and 'Bayesian Model') http://purl.obolibrary.org/obo/GO_0016740 transferase activity 'transferase activity' SubClassOf 'catalytic activity' http://www.ebi.ac.uk/swo/SWO_0000430 Spotfire 'Spotfire' SubClassOf 'is developed by' value 'TIBCO Software Inc' 'Spotfire' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000433 http://www.ebi.ac.uk/swo/SWO_0000432 TAS Software 'TAS Software' SubClassOf 'is published by' value 'Affymetrix' 'TAS Software' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200000 http://www.ebi.ac.uk/swo/SWO_0000435 TargetSearch 'TargetSearch' SubClassOf 'implements' some ('Library Search Algorithm' and 'PPC algorithm') 'TargetSearch' SubClassOf 'is published by' value 'Bioconductor' 'TargetSearch' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Library Search Algorithm' and 'PPC algorithm') 'TargetSearch' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000438 TypeInfo 'TypeInfo' SubClassOf 'is published by' value 'Bioconductor' 'TypeInfo' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000442 VanillaICE 'VanillaICE' SubClassOf 'implements' some 'Hidden Markov Model' 'VanillaICE' SubClassOf 'is published by' value 'Bioconductor' 'VanillaICE' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hidden Markov Model' 'VanillaICE' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000446 XDE 'XDE' SubClassOf 'is published by' value 'Bioconductor' 'XDE' SubClassOf 'implements' some ('Markov Chain Monte Carlo' and 'Bayesian Model') 'XDE' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('Markov Chain Monte Carlo' and 'Bayesian Model') 'XDE' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000447 XDotsReader 'XDotsReader' SubClassOf 'is developed by' value 'COSE, France' 'XDotsReader' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_1200006 http://www.ebi.ac.uk/swo/SWO_0000451 Acuity 'Acuity' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Molecular Devices')) 'Acuity' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_0000299)) http://www.ebi.ac.uk/swo/SWO_0000450 Array Comparative Genomic Hybridization 'Array Comparative Genomic Hybridization' SubClassOf 'implements' some ''FDR'' 'Array Comparative Genomic Hybridization' SubClassOf 'implements' some 'Hidden Markov Model' 'Array Comparative Genomic Hybridization' SubClassOf 'implements' some ''t-test'' 'Array Comparative Genomic Hybridization' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'Hidden Markov Model' 'Array Comparative Genomic Hybridization' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''FDR'' 'Array Comparative Genomic Hybridization' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ''t-test'' http://www.ebi.ac.uk/swo/SWO_0000453 affyContam 'affyContam' SubClassOf 'is published by' value 'Bioconductor' 'affyContam' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000452 affxparser 'affxparser' SubClassOf 'is published by' value 'Bioconductor' 'affxparser' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000455 'affyPLM' ''affyPLM'' SubClassOf 'implements' some (''PLM'' and 'RMA' and 'M-estimation regression') ''affyPLM'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some (''PLM'' and 'RMA' and 'M-estimation regression') http://www.ebi.ac.uk/swo/SWO_0000454 affyImGUI 'affyImGUI' SubClassOf 'implements' some (''PLM'' or 'RMA') 'affyImGUI' SubClassOf 'is published by' value 'Bioconductor' 'affyImGUI' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some (''PLM'' or 'RMA') 'affyImGUI' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000457 affyQCReport 'affyQCReport' SubClassOf 'is published by' value 'Bioconductor' 'affyQCReport' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000456 affyPara 'affyPara' SubClassOf 'is published by' value 'Bioconductor' 'affyPara' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://purl.obolibrary.org/obo/GO_0016772 transferase activity, transferring phosphorus-containing groups 'transferase activity, transferring phosphorus-containing groups' SubClassOf 'transferase activity' http://www.ebi.ac.uk/swo/SWO_0000459 'affycoretools' ''affycoretools'' SubClassOf 'implements' some ('RMA' and ''FDR'') ''affycoretools'' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some ('RMA' and ''FDR'') http://www.ebi.ac.uk/swo/SWO_0000458 affyTiling 'affyTiling' SubClassOf 'is published by' value 'Bioconductor' 'affyTiling' SubClassOf 'implements' some 'RMA' 'affyTiling' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 'affyTiling' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000740 some 'RMA' http://www.ebi.ac.uk/swo/SWO_0000461 affypdnn 'affypdnn' SubClassOf 'is published by' value 'Bioconductor' 'affypdnn' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000463 altcdfenvs 'altcdfenvs' SubClassOf 'is published by' value 'Bioconductor' 'altcdfenvs' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000465 annaffy 'annaffy' SubClassOf 'is published by' value 'Bioconductor' 'annaffy' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000468 annotationTools 'annotationTools' SubClassOf 'is published by' value 'Bioconductor' 'annotationTools' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000460 affyio 'affyio' SubClassOf 'is published by' value 'Bioconductor' 'affyio' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://purl.obolibrary.org/obo/GO_0016301 kinase activity 'kinase activity' SubClassOf 'transferase activity, transferring phosphorus-containing groups' 'kinase activity' SubClassOf 'molecular_function' http://www.ebi.ac.uk/swo/SWO_0000405 ArrayExpress Bioconductor 'ArrayExpress Bioconductor' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Bioconductor')) 'ArrayExpress Bioconductor' SubClassOf 'output of' some ('software publishing process' and ('has participant' value http://www.ebi.ac.uk/swo/SWO_1200004)) http://www.ebi.ac.uk/swo/SWO_0000417 ScanAlyze 'ScanAlyze' SubClassOf 'is developed by' value 'obsolete_Stanford University' 'ScanAlyze' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000431 http://www.ebi.ac.uk/swo/SWO_0000416 ScISI 'ScISI' SubClassOf 'is published by' value 'Bioconductor' 'ScISI' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000418 ScanArray 'ScanArray' SubClassOf 'is developed by' value 'PerkinElmer' 'ScanArray' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000325 http://www.ebi.ac.uk/swo/SWO_0000422 ShortRead 'ShortRead' SubClassOf 'is published by' value 'Bioconductor' 'ShortRead' SubClassOf 'is published by' value http://www.ebi.ac.uk/swo/SWO_1200004 http://www.ebi.ac.uk/swo/SWO_0000421 Scanning software G2565AA version A6.3.1 'Scanning software G2565AA version A6.3.1' SubClassOf 'is developed by' value 'Agilent Technologies' 'Scanning software G2565AA version A6.3.1' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000033 http://www.ebi.ac.uk/swo/SWO_0000424 Silicon Genetics Genespring 'Silicon Genetics Genespring' SubClassOf 'is developed by' value 'Agilent Technologies' 'Silicon Genetics Genespring' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000033 http://www.ebi.ac.uk/swo/SWO_0000429 Spotfinder [TIGR] 'Spotfinder [TIGR]' SubClassOf 'is developed by' value 'Dana-Farber Cancer Institute and Harvard School of Public Health' 'Spotfinder [TIGR]' SubClassOf 'is developed by' value 'J. Craig Venter Institute' 'Spotfinder [TIGR]' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_1200008 'Spotfinder [TIGR]' SubClassOf http://www.ebi.ac.uk/swo/SWO_0000394 value http://www.ebi.ac.uk/swo/SWO_0000244 http://purl.obolibrary.org/obo/GO_0003824 catalytic activity 'catalytic activity' SubClassOf 'molecular_function' http://purl.obolibrary.org/obo/NCBITaxon_33208 Metazoa 'Metazoa' SubClassOf 'Opisthokonta' http://purl.obolibrary.org/obo/GO_0016740 transferase activity 'transferase activity' SubClassOf 'catalytic activity' http://purl.obolibrary.org/obo/GO_0016772 transferase activity, transferring phosphorus-containing groups 'transferase activity, transferring phosphorus-containing groups' SubClassOf 'transferase activity' http://purl.obolibrary.org/obo/GO_0003824 catalytic activity 'catalytic activity' SubClassOf 'molecular_function'