469 142 14 http://www.ebi.ac.uk/swo/SWO_0000190 GeneRfold 'GeneRfold' SubClassOf 'software' 'GeneRfold' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000192 GeneSelector 'GeneSelector' SubClassOf 'software' 'GeneSelector' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000191 GeneSelectMMD 'GeneSelectMMD' SubClassOf 'is encoded in' some 'R language' 'GeneSelectMMD' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000193 GeneSpring 'GeneSpring' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Agilent Technologies')) 'GeneSpring' SubClassOf 'is encoded in' some 'R language' 'GeneSpring' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000196 GeneTraffic 'GeneTraffic' SubClassOf 'is encoded in' some 'R language' 'GeneTraffic' SubClassOf 'software' http://www.ebi.ac.uk/swo/data/SWO_3000060 Affymetrix-compliant data 'Affymetrix-compliant data' SubClassOf 'has format specification' some ('data format specification' and ('is published by' value 'Affymetrix')) http://www.ebi.ac.uk/swo/data/SWO_3000053 Knowledge representation role 'Knowledge representation role' SubClassOf 'role' 'Knowledge representation role' SubClassOf 'realizable entity' http://www.ebi.ac.uk/swo/data/SWO_3000056 BioPAX Manchester OWL Syntax format 'BioPAX Manchester OWL Syntax format' SubClassOf 'has_role' some 'Knowledge representation role' 'BioPAX Manchester OWL Syntax format' SubClassOf http://purl.obolibrary.org/obo/RO_0000053 some 'Knowledge representation role' http://www.ebi.ac.uk/swo/data/SWO_3000055 BioPAX RDF/XML format 'BioPAX RDF/XML format' SubClassOf 'has_role' some 'Knowledge representation role' 'BioPAX RDF/XML format' SubClassOf http://purl.obolibrary.org/obo/RO_0000053 some 'Knowledge representation role' http://www.ebi.ac.uk/swo/SWO_0000158 libSBML 'libSBML' SubClassOf 'is encoded in' some 'R language' 'libSBML' SubClassOf 'software' http://purl.obolibrary.org/obo/OBI_0000011 planned process 'planned process' SubClassOf http://purl.obolibrary.org/obo/BFO_0000055 some (http://purl.obolibrary.org/obo/RO_0000059 some 'plan specification') 'planned process' EquivalentTo http://purl.obolibrary.org/obo/BFO_0000055 some (http://purl.obolibrary.org/obo/RO_0000059 some 'plan specification') http://www.ebi.ac.uk/swo/SWO_0000164 GLAD 'GLAD' SubClassOf 'is encoded in' some 'R language' 'GLAD' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000168 GOstats 'GOstats' SubClassOf 'is encoded in' some 'R language' 'GOstats' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000163 GGtools 'GGtools' SubClassOf 'is encoded in' some 'R language' 'GGtools' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000170 GSEABase 'GSEABase' SubClassOf 'software' 'GSEABase' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000171 GSEAlm 'GSEAlm' SubClassOf 'software' 'GSEAlm' SubClassOf 'is encoded in' some 'R language' http://purl.obolibrary.org/obo/IAO_0000033 directive information entity 'directive information entity' SubClassOf http://purl.obolibrary.org/obo/IAO_0000136 some 'realizable entity' http://purl.obolibrary.org/obo/IAO_0000030 information content entity 'information content entity' SubClassOf http://purl.obolibrary.org/obo/IAO_0000136 some 'entity' http://www.ebi.ac.uk/swo/SWO_0000189 GeneRegionScan 'GeneRegionScan' SubClassOf 'software' 'GeneRegionScan' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000188 GeneR 'GeneR' SubClassOf 'is encoded in' some 'R language' 'GeneR' SubClassOf 'software' http://purl.obolibrary.org/obo/IAO_0000025 programming language 'programming language' SubClassOf 'information content entity' 'programming language' SubClassOf 'plan specification' http://www.ebi.ac.uk/swo/SWO_0000594 limmaGUI 'limmaGUI' SubClassOf 'software' 'limmaGUI' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000593 limma 'limma' SubClassOf 'is encoded in' some 'R language' 'limma' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000599 logicFS 'logicFS' SubClassOf 'is encoded in' some 'R language' 'logicFS' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000590 keggorth 'keggorth' SubClassOf 'software' 'keggorth' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000591 lapmix 'lapmix' SubClassOf 'is encoded in' some 'R language' 'lapmix' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000133 DAVID 'DAVID' SubClassOf 'is executed in' some 'Gene-Set Enrichment Analysis' 'DAVID' SubClassOf 'implements' some 'Gene-Set Enrichment Analysis' http://www.ebi.ac.uk/swo/SWO_0000135 PSI-BLAST 'PSI-BLAST' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000138 Entrez 'Entrez' SubClassOf 'software' 'Entrez' SubClassOf 'is executed in' some 'web content search' http://www.ebi.ac.uk/swo/SWO_0000137 NONMEM 'NONMEM' SubClassOf 'has interface' some 'command-line interface' 'NONMEM' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000149 Mac OS 'Mac OS' SubClassOf 'is executed in' some 'manage computer operations' 'Mac OS' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000140 search engine 'search engine' SubClassOf 'is executed in' some 'web content search' http://www.ebi.ac.uk/swo/SWO_0000550 gene2pathway 'gene2pathway' SubClassOf 'is encoded in' some 'R language' 'gene2pathway' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000551 geneRecommender 'geneRecommender' SubClassOf 'software' 'geneRecommender' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000556 genemeta 'genemeta' SubClassOf 'is encoded in' some 'R language' 'genemeta' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000555 genefilter 'genefilter' SubClassOf 'is encoded in' some 'R language' 'genefilter' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000558 genomeIntervals 'genomeIntervals' SubClassOf 'is encoded in' some 'R language' 'genomeIntervals' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000557 geneplotter 'geneplotter' SubClassOf 'software' 'geneplotter' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000561 globaltest 'globaltest' SubClassOf 'is encoded in' some 'R language' 'globaltest' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000563 goProfiles 'goProfiles' SubClassOf 'is encoded in' some 'R language' 'goProfiles' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000565 gpls 'gpls' SubClassOf 'is encoded in' some 'R language' 'gpls' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000564 goTools 'goTools' SubClassOf 'is encoded in' some 'R language' 'goTools' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000567 graph 'graph' SubClassOf 'software' 'graph' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000572 hexbin 'hexbin' SubClassOf 'software' 'hexbin' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000574 hopach 'hopach' SubClassOf 'is encoded in' some 'R language' 'hopach' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000578 Icens 'Icens' SubClassOf 'is encoded in' some 'R language' 'Icens' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000577 hypergraph 'hypergraph' SubClassOf 'is encoded in' some 'R language' 'hypergraph' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000579 idiogram 'idiogram' SubClassOf 'is encoded in' some 'R language' 'idiogram' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000583 iterativeBMAsurv 'iterativeBMAsurv' SubClassOf 'software' 'iterativeBMAsurv' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000582 iterativeBMA 'iterativeBMA' SubClassOf 'software' 'iterativeBMA' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000581 impute 'impute' SubClassOf 'software' 'impute' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000510 crlmm 'crlmm' SubClassOf 'software' 'crlmm' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000512 ctc 'ctc' SubClassOf 'is encoded in' some 'R language' 'ctc' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000514 daMA 'daMA' SubClassOf 'software' 'daMA' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000521 'domainsignatures' ''domainsignatures'' SubClassOf 'is encoded in' some 'R language' ''domainsignatures'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000520 'diffGeneAnalysis' ''diffGeneAnalysis'' SubClassOf 'software' ''diffGeneAnalysis'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000523 dyebias 'dyebias' SubClassOf 'is encoded in' some 'R language' 'dyebias' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000522 'dualKS' ''dualKS'' SubClassOf 'is encoded in' some 'R language' ''dualKS'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000525 ecolitk 'ecolitk' SubClassOf 'is encoded in' some 'R language' 'ecolitk' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000527 'edgeR' ''edgeR'' SubClassOf 'is encoded in' some 'R language' ''edgeR'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000526 edd 'edd' SubClassOf 'is encoded in' some 'R language' 'edd' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000529 'explorase' ''explorase'' SubClassOf 'is encoded in' some 'R language' ''explorase'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000528 exonmap 'exonmap' SubClassOf 'is encoded in' some 'R language' 'exonmap' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000530 'externalVector' ''externalVector'' SubClassOf 'software' ''externalVector'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000532 factDesign 'factDesign' SubClassOf 'software' 'factDesign' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000534 fdrame 'fdrame' SubClassOf 'is encoded in' some 'R language' 'fdrame' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000533 fbat 'fbat' SubClassOf 'software' 'fbat' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000536 flagme 'flagme' SubClassOf 'is encoded in' some 'R language' 'flagme' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000538 flowCore 'flowCore' SubClassOf 'is encoded in' some 'R language' 'flowCore' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000537 flowClust 'flowClust' SubClassOf 'is encoded in' some 'R language' 'flowClust' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000539 flowFlowJo 'flowFlowJo' SubClassOf 'is encoded in' some 'R language' 'flowFlowJo' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000541 flowStats 'flowStats' SubClassOf 'software' 'flowStats' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000540 flowQ 'flowQ' SubClassOf 'is encoded in' some 'R language' 'flowQ' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000543 flowViz 'flowViz' SubClassOf 'software' 'flowViz' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000542 flowUtils 'flowUtils' SubClassOf 'is encoded in' some 'R language' 'flowUtils' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000545 'gaggle' ''gaggle'' SubClassOf 'is encoded in' some 'R language' ''gaggle'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000544 gaga 'gaga' SubClassOf 'software' 'gaga' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000547 gcrma 'gcrma' SubClassOf 'is encoded in' some 'R language' 'gcrma' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000549 'genArise' ''genArise'' SubClassOf 'software' ''genArise'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000501 'codelink' ''codelink'' SubClassOf 'is encoded in' some 'R language' ''codelink'' SubClassOf 'software' http://purl.obolibrary.org/obo/OBI_0200111 data visualization 'data visualization' SubClassOf http://purl.obolibrary.org/obo/OBI_0000293 only 'data item' 'data visualization' SubClassOf http://purl.obolibrary.org/obo/OBI_0000299 some (http://purl.obolibrary.org/obo/IAO_0000038 or http://purl.obolibrary.org/obo/IAO_0000101) 'data visualization' SubClassOf http://purl.obolibrary.org/obo/OBI_0000299 only (http://purl.obolibrary.org/obo/IAO_0000038 or http://purl.obolibrary.org/obo/IAO_0000101) 'data visualization' SubClassOf http://purl.obolibrary.org/obo/OBI_0000293 some 'data item' http://www.ebi.ac.uk/swo/SWO_0000505 copa 'copa' SubClassOf 'is encoded in' some 'R language' 'copa' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000504 convert 'convert' SubClassOf 'software' 'convert' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000507 cosmoGUI 'cosmoGUI' SubClassOf 'is encoded in' some 'R language' 'cosmoGUI' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000506 cosmo 'cosmo' SubClassOf 'is encoded in' some 'R language' 'cosmo' SubClassOf 'software' http://purl.obolibrary.org/obo/IAO_0000098 data format specification 'data format specification' SubClassOf 'information content entity' http://purl.obolibrary.org/obo/IAO_0000064 algorithm 'algorithm' SubClassOf 'information content entity' http://purl.obolibrary.org/obo/IAO_0000129 version number version name 'version name' SubClassOf 'information content entity' http://purl.obolibrary.org/obo/IAO_0000104 plan specification 'plan specification' SubClassOf http://purl.obolibrary.org/obo/BFO_0000051 some http://purl.obolibrary.org/obo/IAO_0000007 'plan specification' SubClassOf http://purl.obolibrary.org/obo/BFO_0000051 some http://purl.obolibrary.org/obo/IAO_0000005 http://www.ebi.ac.uk/swo/SWO_0000279 MCRestimate 'MCRestimate' SubClassOf 'software' 'MCRestimate' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000285 MVCClass 'MVCClass' SubClassOf 'is encoded in' some 'R language' 'MVCClass' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000288 MantelCorr 'MantelCorr' SubClassOf 'is encoded in' some 'R language' 'MantelCorr' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000289 MassSpecWavelet 'MassSpecWavelet' SubClassOf 'software' 'MassSpecWavelet' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000280 MEDME 'MEDME' SubClassOf 'software' 'MEDME' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000283 MLInterfaces 'MLInterfaces' SubClassOf 'is encoded in' some 'R language' 'MLInterfaces' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000293 MergeMaid 'MergeMaid' SubClassOf 'software' 'MergeMaid' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000292 MeasurementError.cor 'MeasurementError.cor' SubClassOf 'is encoded in' some 'R language' 'MeasurementError.cor' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000295 MiPP 'MiPP' SubClassOf 'is encoded in' some 'R language' 'MiPP' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000294 Mfuzz 'Mfuzz' SubClassOf 'is encoded in' some 'R language' 'Mfuzz' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000231 ITALICS 'ITALICS' SubClassOf 'is encoded in' some 'R language' 'ITALICS' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000230 IRanges 'IRanges' SubClassOf 'software' 'IRanges' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000246 KCsmart 'KCsmart' SubClassOf 'software' 'KCsmart' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000248 KEGGgraph 'KEGGgraph' SubClassOf 'is encoded in' some 'R language' 'KEGGgraph' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000247 KEGGSOAP 'KEGGSOAP' SubClassOf 'software' 'KEGGSOAP' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000252 LBE 'LBE' SubClassOf 'software' 'LBE' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000254 LMGene 'LMGene' SubClassOf 'is encoded in' some 'R language' 'LMGene' SubClassOf 'is executed in' some 'Linear modelling' 'LMGene' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000259 LPEadj 'LPEadj' SubClassOf 'is encoded in' some 'R language' 'LPEadj' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000258 LPE 'LPE' SubClassOf 'software' 'LPE' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000269 MANOR 'MANOR' SubClassOf 'software' 'MANOR' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000671 qpcrNorm 'qpcrNorm' SubClassOf 'is encoded in' some 'R language' 'qpcrNorm' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000672 qpgraph 'qpgraph' SubClassOf 'is encoded in' some 'R language' 'qpgraph' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000675 quantsmooth 'quantsmooth' SubClassOf 'software' 'quantsmooth' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000677 rHVDM 'rHVDM' SubClassOf 'software' 'rHVDM' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000676 qvalue 'qvalue' SubClassOf 'is encoded in' some 'R language' 'qvalue' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000679 rama 'rama' SubClassOf 'software' 'rama' SubClassOf 'is encoded in' some 'R language' 'rama' SubClassOf 'data item' http://www.ebi.ac.uk/swo/SWO_0000678 rMAT 'rMAT' SubClassOf 'is encoded in' some 'R language' 'rMAT' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000683 rbsurv 'rbsurv' SubClassOf 'software' 'rbsurv' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000202 GeneticsDesign 'GeneticsDesign' SubClassOf 'software' 'GeneticsDesign' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000686 rflowcyt 'rflowcyt' SubClassOf 'software' 'rflowcyt' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000201 GeneticsBase 'GeneticsBase' SubClassOf 'software' 'GeneticsBase' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000685 reb 'reb' SubClassOf 'software' 'reb' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000688 rsbml 'rsbml' SubClassOf 'software' 'rsbml' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000203 GeneticsPed 'GeneticsPed' SubClassOf 'is encoded in' some 'R language' 'GeneticsPed' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000206 GlobalAncova 'GlobalAncova' SubClassOf 'software' 'GlobalAncova' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000205 GenomeGraphs 'GenomeGraphs' SubClassOf 'is encoded in' some 'R language' 'GenomeGraphs' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000689 rtracklayer 'rtracklayer' SubClassOf 'is encoded in' some 'R language' 'rtracklayer' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000208 GraphAT 'GraphAT' SubClassOf 'software' 'GraphAT' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000207 GOSemSim 'GOSemSim' SubClassOf 'software' 'GOSemSim' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000209 GraphAlignment 'GraphAlignment' SubClassOf 'is encoded in' some 'R language' 'GraphAlignment' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000693 sigPathway 'sigPathway' SubClassOf 'software' 'sigPathway' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000692 seqLogo 'seqLogo' SubClassOf 'software' 'seqLogo' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000694 siggenes 'siggenes' SubClassOf 'software' 'siggenes' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000213 HELP 'HELP' SubClassOf 'software' 'HELP' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000697 simulatorAPMS 'simulatorAPMS' SubClassOf 'software' 'simulatorAPMS' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000696 simpleaffy 'simpleaffy' SubClassOf 'is encoded in' some 'R language' 'simpleaffy' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000699 xmapbridge 'xmapbridge' SubClassOf 'software' 'xmapbridge' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000214 HEM 'HEM' SubClassOf 'software' 'HEM' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000698 sizepower 'sizepower' SubClassOf 'software' 'sizepower' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000691 sagenhaft 'sagenhaft' SubClassOf 'software' 'sagenhaft' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000690 safe 'safe' SubClassOf 'is encoded in' some 'R language' 'safe' SubClassOf 'software' 'safe' SubClassOf 'data item' http://www.ebi.ac.uk/swo/SWO_0000222 Harshlight 'Harshlight' SubClassOf 'is encoded in' some 'R language' 'Harshlight' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000224 Heatplus 'Heatplus' SubClassOf 'is encoded in' some 'R language' 'Heatplus' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000226 HilbertVisGUI 'HilbertVisGUI' SubClassOf 'software' 'HilbertVisGUI' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000225 HilbertVis 'HilbertVis' SubClassOf 'software' 'HilbertVis' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000630 multtest 'multtest' SubClassOf 'is encoded in' some 'R language' 'multtest' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000632 nem 'nem' SubClassOf 'software' 'nem' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000635 nnNorm 'nnNorm' SubClassOf 'is encoded in' some 'R language' 'nnNorm' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000637 occugene 'occugene' SubClassOf 'software' 'occugene' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000636 nudge 'nudge' SubClassOf 'software' 'nudge' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000639 oligoClasses 'oligoClasses' SubClassOf 'is encoded in' some 'R language' 'oligoClasses' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000638 oligo 'oligo' SubClassOf 'is encoded in' some 'R language' 'oligo' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000642 ontoTools 'ontoTools' SubClassOf 'software' 'ontoTools' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000641 oneChannelGUI 'oneChannelGUI' SubClassOf 'is encoded in' some 'R language' 'oneChannelGUI' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000646 panp 'panp' SubClassOf 'is encoded in' some 'R language' 'panp' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000645 pamr 'pamr' SubClassOf 'software' 'pamr' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000647 parody 'parody' SubClassOf 'is encoded in' some 'R language' 'parody' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000649 pathRender 'pathRender' SubClassOf 'is encoded in' some 'R language' 'pathRender' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000651 pcot2 'pcot2' SubClassOf 'software' 'pcot2' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000650 pcaMethods 'pcaMethods' SubClassOf 'software' 'pcaMethods' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000653 pdInfoBuilder 'pdInfoBuilder' SubClassOf 'software' 'pdInfoBuilder' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000654 pdmclass 'pdmclass' SubClassOf 'software' 'pdmclass' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000657 pickgene 'pickgene' SubClassOf 'software' 'pickgene' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000656 pgUtils 'pgUtils' SubClassOf 'software' 'pgUtils' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000659 plgem 'plgem' SubClassOf 'is encoded in' some 'R language' 'plgem' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000658 pkgDepTools 'pkgDepTools' SubClassOf 'is encoded in' some 'R language' 'pkgDepTools' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000660 plier 'plier' SubClassOf 'is encoded in' some 'R language' 'plier' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000662 plw 'plw' SubClassOf 'software' 'plw' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000666 prada 'prada' SubClassOf 'software' 'prada' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000665 ppiStats 'ppiStats' SubClassOf 'software' 'ppiStats' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000667 preprocessCore 'preprocessCore' SubClassOf 'is encoded in' some 'R language' 'preprocessCore' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000669 puma 'puma' SubClassOf 'is encoded in' some 'R language' 'puma' SubClassOf 'software' http://kt.ijs.si/panovp/OntoDM#OntoDM_953101 data visualization task 'data visualization task' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass 'data visualization task' SubClassOf 'obsolete SWO class' http://www.ebi.ac.uk/swo/SWO_0000609 made4 'made4' SubClassOf 'software' 'made4' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000601 logitT 'logitT' SubClassOf 'is encoded in' some 'R language' 'logitT' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000604 maCorrPlot 'maCorrPlot' SubClassOf 'software' 'maCorrPlot' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000603 lumi 'lumi' SubClassOf 'software' 'lumi' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000606 maSigPro 'maSigPro' SubClassOf 'is encoded in' some 'R language' 'maSigPro' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000605 maDB 'maDB' SubClassOf 'is encoded in' some 'R language' 'maDB' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000608 macat 'macat' SubClassOf 'software' 'macat' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000607 maanova 'maanova' SubClassOf 'is encoded in' some 'R language' 'maanova' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000611 makePlatformDesign 'makePlatformDesign' SubClassOf 'software' 'makePlatformDesign' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000610 maigesPack 'maigesPack' SubClassOf 'is encoded in' some 'R language' 'maigesPack' SubClassOf 'software' http://purl.obolibrary.org/obo/OBI_0200000 data transformation 'data transformation' EquivalentTo http://purl.obolibrary.org/obo/OBI_0000417 some http://purl.obolibrary.org/obo/OBI_0200166 'data transformation' SubClassOf http://purl.obolibrary.org/obo/BFO_0000055 some (http://purl.obolibrary.org/obo/RO_0000059 some ('algorithm' and (http://purl.obolibrary.org/obo/BFO_0000051 some http://purl.obolibrary.org/obo/IAO_0000005))) 'data transformation' SubClassOf http://purl.obolibrary.org/obo/OBI_0000293 only 'data item' 'data transformation' SubClassOf http://purl.obolibrary.org/obo/OBI_0000417 some http://purl.obolibrary.org/obo/OBI_0200166 http://www.ebi.ac.uk/swo/SWO_0000613 marray 'marray' SubClassOf 'is encoded in' some 'R language' 'marray' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000612 makecdfenv 'makecdfenv' SubClassOf 'software' 'makecdfenv' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000617 mdqc 'mdqc' SubClassOf 'software' 'mdqc' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000616 matchprobes 'matchprobes' SubClassOf 'software' 'matchprobes' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000619 metaArray 'metaArray' SubClassOf 'is encoded in' some 'R language' 'metaArray' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000622 miRNApath 'miRNApath' SubClassOf 'is encoded in' some 'R language' 'miRNApath' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000621 metahdep 'metahdep' SubClassOf 'software' 'metahdep' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000623 microRNA 'microRNA' SubClassOf 'is encoded in' some 'R language' 'microRNA' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000625 minet 'minet' SubClassOf 'is encoded in' some 'R language' 'minet' SubClassOf 'software' http://purl.obolibrary.org/obo/BFO_0000003 occurrent 'occurrent' DisjointWith http://purl.obolibrary.org/obo/BFO_0000050 some 'continuant' 'continuant' DisjointWith 'occurrent' 'occurrent' SubClassOf http://purl.obolibrary.org/obo/BFO_0000050 only 'occurrent' http://purl.obolibrary.org/obo/BFO_0000004 independent continuant 'independent continuant' DisjointWith 'specifically dependent continuant' 'independent continuant' DisjointWith 'generically dependent continuant' DisjointClasses: 'independent continuant', 'specifically dependent continuant', 'generically dependent continuant' 'independent continuant' SubClassOf http://purl.obolibrary.org/obo/BFO_0000050 only 'independent continuant' http://purl.obolibrary.org/obo/BFO_0000001 entity 'entity' DisjointWith 'obsolete SWO class' http://purl.obolibrary.org/obo/BFO_0000002 continuant 'continuant' DisjointWith http://purl.obolibrary.org/obo/BFO_0000050 some 'occurrent' 'continuant' SubClassOf http://purl.obolibrary.org/obo/BFO_0000050 only 'continuant' 'continuant' DisjointWith 'occurrent' http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant 'independent continuant' DisjointWith 'generically dependent continuant' 'specifically dependent continuant' DisjointWith 'generically dependent continuant' DisjointClasses: 'independent continuant', 'specifically dependent continuant', 'generically dependent continuant' http://purl.obolibrary.org/obo/BFO_0000017 realizable entity 'realizable entity' DisjointWith http://purl.obolibrary.org/obo/BFO_0000019 'realizable entity' SubClassOf http://purl.obolibrary.org/obo/BFO_0000050 only 'realizable entity' http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant 'independent continuant' DisjointWith 'specifically dependent continuant' 'specifically dependent continuant' DisjointWith 'generically dependent continuant' DisjointClasses: 'independent continuant', 'specifically dependent continuant', 'generically dependent continuant' 'specifically dependent continuant' SubClassOf http://purl.obolibrary.org/obo/BFO_0000050 only 'specifically dependent continuant' http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/BFO_0000016 DisjointWith 'role' http://www.ebi.ac.uk/swo/SWO_0000396 software developer organization 'software developer organization' SubClassOf 'has_role' some 'software developer role' http://www.ebi.ac.uk/swo/SWO_0000397 software publisher organization 'software publisher organization' SubClassOf 'has_role' some 'publisher role' http://www.ebi.ac.uk/swo/SWO_0000390 SSPA 'SSPA' SubClassOf 'is encoded in' some 'R language' 'SSPA' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100018 'AffyCompatible' ''AffyCompatible'' SubClassOf 'software' ''AffyCompatible'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100019 'AffyExpress' ''AffyExpress'' SubClassOf 'is encoded in' some 'R language' ''AffyExpress'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100004 Algorithms for Calculating Microarray Enrichment 'Algorithms for Calculating Microarray Enrichment' SubClassOf 'is encoded in' some 'R language' 'Algorithms for Calculating Microarray Enrichment' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100001 50-50 MANOVA '50-50 MANOVA' SubClassOf 'is encoded in' some 'MATLAB language' '50-50 MANOVA' SubClassOf 'is encoded in' some 'R language' '50-50 MANOVA' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100002 ABarray 'ABarray' SubClassOf 'is encoded in' some 'R language' 'ABarray' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100031 'BGmix' ''BGmix'' SubClassOf 'software' ''BGmix'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100037 'BSgenome' ''BSgenome'' SubClassOf 'software' ''BSgenome'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100023 Agi4x44PreProcess 'Agi4x44PreProcess' SubClassOf 'software' 'Agi4x44PreProcess' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100029 'BCRANK' ''BCRANK'' SubClassOf 'software' ''BCRANK'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000352 RbcBook1 'RbcBook1' SubClassOf 'is encoded in' some 'R language' 'RbcBook1' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100050 'BufferedMatrix' ''BufferedMatrix'' SubClassOf 'is encoded in' some 'R language' ''BufferedMatrix'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100051 'BufferedMatrixMethods' ''BufferedMatrixMethods'' SubClassOf 'software' ''BufferedMatrixMethods'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000354 RdbiPgSQL 'RdbiPgSQL' SubClassOf 'is encoded in' some 'R language' 'RdbiPgSQL' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100052 'CALIB' ''CALIB'' SubClassOf 'is encoded in' some 'R language' ''CALIB'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000353 Rdbi 'Rdbi' SubClassOf 'software' 'Rdbi' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100053 'CAMERA' ''CAMERA'' SubClassOf 'is encoded in' some 'R language' ''CAMERA'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000356 RefPlus 'RefPlus' SubClassOf 'software' 'RefPlus' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000355 Rdisop 'Rdisop' SubClassOf 'software' 'Rdisop' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000358 Resourcerer 'Resourcerer' SubClassOf 'software' 'Resourcerer' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100055 'CMA' ''CMA'' SubClassOf 'is encoded in' some 'R language' ''CMA'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000350 RankProd 'RankProd' SubClassOf 'software' 'RankProd' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100057 'CORREP' ''CORREP'' SubClassOf 'is encoded in' some 'R language' ''CORREP'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000359 Rgraphviz 'Rgraphviz' SubClassOf 'is encoded in' some 'R language' 'Rgraphviz' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000362 Rmagpie 'Rmagpie' SubClassOf 'software' 'Rmagpie' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000367 RpsiXML 'RpsiXML' SubClassOf 'software' 'RpsiXML' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000369 Rtreemix 'Rtreemix' SubClassOf 'is encoded in' some 'R language' 'Rtreemix' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000368 Rredland 'Rredland' SubClassOf 'is encoded in' some 'R language' 'Rredland' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100048 'Biostrings' ''Biostrings'' SubClassOf 'is encoded in' some 'R language' ''Biostrings'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100043 'BicARE' ''BicARE'' SubClassOf 'is encoded in' some 'R language' ''BicARE'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100044 'BioMVCClass' ''BioMVCClass'' SubClassOf 'is encoded in' some 'R language' ''BioMVCClass'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000361 Rintact 'Rintact' SubClassOf 'software' 'Rintact' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100045 'Biobase' ''Biobase'' SubClassOf 'is encoded in' some 'R language' ''Biobase'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000360 Ringo 'Ringo' SubClassOf 'data item' 'Ringo' SubClassOf 'is encoded in' some 'R language' 'Ringo' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100046 'BiocCaseStudies' ''BiocCaseStudies'' SubClassOf 'software' ''BiocCaseStudies'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000373 SAGx 'SAGx' SubClassOf 'is encoded in' some 'R language' 'SAGx' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100073 Annotation-Driven Clustering 'Annotation-Driven Clustering' SubClassOf 'is encoded in' some 'R language' 'Annotation-Driven Clustering' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100075 R software 'R software' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000377 SBMLR 'SBMLR' SubClassOf 'is encoded in' some 'R language' 'SBMLR' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000370 Ruuid 'Ruuid' SubClassOf 'software' 'Ruuid' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100079 MAGE-TAB inputting software 'MAGE-TAB inputting software' SubClassOf 'has specified data input' some ('data item' and ('has format specification' some 'MAGE-TAB')) http://www.ebi.ac.uk/swo/SWO_0000385 SMAP 'SMAP' SubClassOf 'software' 'SMAP' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000384 SLqPCR 'SLqPCR' SubClassOf 'is encoded in' some 'R language' 'SLqPCR' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100062 Category 'Category' SubClassOf 'software' 'Category' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000387 SNPchip 'SNPchip' SubClassOf 'is encoded in' some 'R language' 'SNPchip' SubClassOf 'software' 'SNPchip' SubClassOf 'implements' some ('data visualization' and 'data annotation' and 'descriptive statistical calculation') 'SNPchip' SubClassOf 'is executed in' some ('data visualization' or 'data annotation' or 'descriptive statistical calculation') http://www.ebi.ac.uk/swo/SWO_1100063 'ChemmineR' ''ChemmineR'' SubClassOf 'is encoded in' some 'R language' ''ChemmineR'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000388 SPIA 'SPIA' SubClassOf 'is encoded in' some 'R language' 'SPIA' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100069 affycomp 'affycomp' SubClassOf 'software' 'affycomp' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000383 SLGI 'SLGI' SubClassOf 'software' 'SLGI' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100067 multiscan 'multiscan' SubClassOf 'software' 'multiscan' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000382 SIM 'SIM' SubClassOf 'software' 'SIM' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100068 affy 'affy' SubClassOf 'software' 'affy' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100094 'EBImage' ''EBImage'' SubClassOf 'software' ''EBImage'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100095 'EBarrays' ''EBarrays'' SubClassOf 'software' ''EBarrays'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000312 OutlierD 'OutlierD' SubClassOf 'software' 'OutlierD' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000311 OrderedList 'OrderedList' SubClassOf 'is encoded in' some 'R language' 'OrderedList' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000314 PAnnBuilder 'PAnnBuilder' SubClassOf 'software' 'PAnnBuilder' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100093 'DNAcopy' ''DNAcopy'' SubClassOf 'software' ''DNAcopy'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100098 Expert 2100 'Expert 2100' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Agilent Technologies')) 'Expert 2100' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_1000147 Design Science License 'Design Science License' SubClassOf 'has clause' some 'Usage unrestricted' 'Design Science License' SubClassOf 'has clause' some 'Source code available' 'Design Science License' SubClassOf 'software license' http://www.ebi.ac.uk/swo/license/SWO_1000149 OME Software Conditons of Use 'OME Software Conditons of Use' SubClassOf 'has clause' some 'Source code available' 'OME Software Conditons of Use' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/SWO_0000316 PCpheno 'PCpheno' SubClassOf 'software' 'PCpheno' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000317 PGSEA 'PGSEA' SubClassOf 'is encoded in' some 'R language' 'PGSEA' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000319 PLPE 'PLPE' SubClassOf 'software' 'PLPE' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/license/SWO_1000140 Non-Commercial No-Fee License 'Non-Commercial No-Fee License' SubClassOf 'has clause' some 'Free' 'Non-Commercial No-Fee License' SubClassOf 'has clause' some 'Non-commercial use only' http://www.ebi.ac.uk/swo/license/SWO_1000142 UCSC Genome Browser Commercial Software License 'UCSC Genome Browser Commercial Software License' SubClassOf 'has clause' some 'Not Free' 'UCSC Genome Browser Commercial Software License' SubClassOf 'has clause' some 'Commercial use only' http://www.ebi.ac.uk/swo/SWO_1100083 'CoCiteStats' ''CoCiteStats'' SubClassOf 'is encoded in' some 'R language' ''CoCiteStats'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000322 PROcess 'PROcess' SubClassOf 'is encoded in' some 'R language' 'PROcess' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100088 'DEDS' ''DEDS'' SubClassOf 'is encoded in' some 'R language' ''DEDS'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100089 'DFP' ''DFP'' SubClassOf 'is encoded in' some 'R language' ''DFP'' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_1000135 ALFRED Copyright 'ALFRED Copyright' SubClassOf 'has clause' some 'Usage unrestricted' 'ALFRED Copyright' SubClassOf 'has clause' some 'Source code available' 'ALFRED Copyright' SubClassOf 'has clause' some 'No restrictions on derivatives' http://www.ebi.ac.uk/swo/license/SWO_1000137 Fee-Based Commercial License 'Fee-Based Commercial License' SubClassOf 'has clause' some 'Commercial use only' 'Fee-Based Commercial License' SubClassOf 'has clause' some 'Not Free' http://www.ebi.ac.uk/swo/license/SWO_1000131 Terms of Use for EMBL-EBI Services 'Terms of Use for EMBL-EBI Services' SubClassOf 'has clause' some 'No restrictions on derivatives' 'Terms of Use for EMBL-EBI Services' SubClassOf 'has clause' some 'Source code available' 'Terms of Use for EMBL-EBI Services' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/SWO_0000333 RBGL 'RBGL' SubClassOf 'software' 'RBGL' SubClassOf 'has specified data input' some ('data item' and ('has format specification' some 'XML')) 'RBGL' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000335 RBioinf 'RBioinf' SubClassOf 'software' 'RBioinf' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000338 RLMM 'RLMM' SubClassOf 'software' 'RLMM' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000343 RMAExpress 'RMAExpress' SubClassOf 'has specified data input' some ('has format specification' only ('CEL binary format' and 'CDF binary format')) 'RMAExpress' SubClassOf 'implements' some ('background correction' and 'data normalization') 'RMAExpress' SubClassOf 'is executed in' some 'background correction' 'RMAExpress' SubClassOf 'has specified data input' some ('data item' and ('has format specification' only ('CEL binary format' or 'CDF binary format'))) 'RMAExpress' SubClassOf 'is executed in' some 'data normalization' http://www.ebi.ac.uk/swo/SWO_0000347 RNAither 'RNAither' SubClassOf 'software' 'RNAither' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000346 RMAGEML 'RMAGEML' SubClassOf 'is encoded in' some 'R language' 'RMAGEML' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000349 RWebServices 'RWebServices' SubClassOf 'is encoded in' some 'R language' 'RWebServices' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000348 ROC 'ROC' SubClassOf 'is encoded in' some 'R language' 'ROC' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_9000074 MIT License 'MIT License' SubClassOf 'software license' 'MIT License' SubClassOf 'has clause' some 'Usage unrestricted' 'MIT License' SubClassOf 'has clause' some 'Source code available' 'MIT License' SubClassOf 'has clause' some 'Derivatives allowed' http://www.ebi.ac.uk/swo/license/SWO_1000100 ODC-By v1.0 'ODC-By v1.0' SubClassOf 'has clause' some 'Derivatives allowed' 'ODC-By v1.0' SubClassOf 'has clause' some 'Source code available' 'ODC-By v1.0' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000101 PDDL v1.0 'PDDL v1.0' SubClassOf 'has clause' some 'No restrictions on derivatives' 'PDDL v1.0' SubClassOf 'has clause' some 'Usage unrestricted' 'PDDL v1.0' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_9000080 GNU LGPL 'GNU LGPL' SubClassOf 'software license' 'GNU LGPL' SubClassOf 'has clause' some 'Usage unrestricted' 'GNU LGPL' SubClassOf 'has clause' some 'No restrictions on derivatives' 'GNU LGPL' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_9000086 LPPL 'LPPL' SubClassOf 'has clause' some 'Source code available' 'LPPL' SubClassOf 'software license' 'LPPL' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_9000087 OPL v1.0 'OPL v1.0' SubClassOf 'software license' 'OPL v1.0' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_9000084 EPL v1 'EPL v1' SubClassOf 'has clause' some 'Source code available' 'EPL v1' SubClassOf 'software license' 'EPL v1' SubClassOf 'has clause' some ('Distribution unrestricted' or 'Distribution with notices') 'EPL v1' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_9000085 Modified BSD 'Modified BSD' SubClassOf 'has clause' some 'Source code available' 'Modified BSD' SubClassOf 'software license' 'Modified BSD' SubClassOf 'has clause' some 'Derivatives allowed' 'Modified BSD' SubClassOf 'has clause' some 'Usage unrestricted' http://purl.obolibrary.org/obo/SWO_1100133 Stavrox 'Stavrox' SubClassOf 'has website homepage' value "http://www.stavrox.com" 'Stavrox' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100134 ProteomicsTools 'ProteomicsTools' SubClassOf 'has website homepage' value "https://github.com/shengqh/RCPA.Tools/wiki" 'ProteomicsTools' SubClassOf 'software' 'ProteomicsTools' SubClassOf 'has license' some 'GNU GPL v3' http://www.ebi.ac.uk/swo/license/SWO_1000119 MIACA Full Copyright 'MIACA Full Copyright' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_1000126 ProDom Commercial License 'ProDom Commercial License' SubClassOf 'has clause' some 'Commercial use only' 'ProDom Commercial License' SubClassOf 'has clause' some 'Not Free' http://www.ebi.ac.uk/swo/license/SWO_1000127 SBGN Open License with Attribution 'SBGN Open License with Attribution' SubClassOf 'has clause' some 'Usage unrestricted' 'SBGN Open License with Attribution' SubClassOf 'has clause' some 'Source code available' 'SBGN Open License with Attribution' SubClassOf 'has clause' some 'No restrictions on derivatives' http://www.ebi.ac.uk/swo/license/SWO_1000128 NLM Open License with Attribution 'NLM Open License with Attribution' SubClassOf 'has clause' some 'Source code available' 'NLM Open License with Attribution' SubClassOf 'has clause' some 'No restrictions on derivatives' 'NLM Open License with Attribution' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000120 ORCID MIT-Style License (MIT) 'ORCID MIT-Style License (MIT)' SubClassOf 'has clause' some 'Usage unrestricted' 'ORCID MIT-Style License (MIT)' SubClassOf 'has clause' some 'Derivatives allowed' 'ORCID MIT-Style License (MIT)' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_1000115 IUPAC/InChI-Trust InChI Licence No. 1.0 'IUPAC/InChI-Trust InChI Licence No. 1.0' SubClassOf 'has clause' some 'Usage unrestricted' 'IUPAC/InChI-Trust InChI Licence No. 1.0' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/SWO_0000307 OCplus 'OCplus' SubClassOf 'software' 'OCplus' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000309 OLINgui 'OLINgui' SubClassOf 'software' 'OLINgui' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000308 OLIN 'OLIN' SubClassOf 'is encoded in' some 'R language' 'OLIN' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000710 sscore 'sscore' SubClassOf 'software' 'sscore' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000719 topGO 'topGO' SubClassOf 'is encoded in' some 'R language' 'topGO' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000712 stam 'stam' SubClassOf 'is encoded in' some 'R language' 'stam' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000711 ssize 'ssize' SubClassOf 'software' 'ssize' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000714 stepNorm 'stepNorm' SubClassOf 'is encoded in' some 'R language' 'stepNorm' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000716 tilingArray 'tilingArray' SubClassOf 'software' 'tilingArray' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000718 tkWidgets 'tkWidgets' SubClassOf 'software' 'tkWidgets' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000717 timecourse 'timecourse' SubClassOf 'is encoded in' some 'R language' 'timecourse' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000721 twilight 'twilight' SubClassOf 'software' 'twilight' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000720 tspair 'tspair' SubClassOf 'is encoded in' some 'R language' 'tspair' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_9000090 Dropbox 'Dropbox' SubClassOf 'has interface' some 'command-line interface' 'Dropbox' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_9000092 EMBOSS package 'EMBOSS package' SubClassOf 'software' 'EMBOSS package' SubClassOf 'has interface' some 'command-line interface' http://www.ebi.ac.uk/swo/SWO_9000094 Grimoires 'Grimoires' SubClassOf 'has interface' some 'command-line interface' 'Grimoires' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000723 vbmp 'vbmp' SubClassOf 'is encoded in' some 'R language' 'vbmp' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000725 vsn 'vsn' SubClassOf 'software' 'vsn' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000727 webbioc 'webbioc' SubClassOf 'is encoded in' some 'R language' 'webbioc' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000726 weaver 'weaver' SubClassOf 'is encoded in' some 'R language' 'weaver' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000729 xcms 'xcms' SubClassOf 'software' 'xcms' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000728 widgetTools 'widgetTools' SubClassOf 'is encoded in' some 'R language' 'widgetTools' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000730 xps 'xps' SubClassOf 'is encoded in' some 'R language' 'xps' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000731 yaqcaffy 'yaqcaffy' SubClassOf 'is encoded in' some 'R language' 'yaqcaffy' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100144 FastQC 'FastQC' SubClassOf 'has website homepage' value "https://github.com/s-andrews/FastQC" 'FastQC' SubClassOf 'has license' some 'GNU GPL v2' 'FastQC' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100145 CutAdapt 'CutAdapt' SubClassOf 'software' 'CutAdapt' SubClassOf 'has website homepage' value "https://cutadapt.readthedocs.io/en/stable/" 'CutAdapt' SubClassOf 'has license' some 'MIT License' http://purl.obolibrary.org/obo/SWO_1100142 RSeQC 'RSeQC' SubClassOf 'software' 'RSeQC' SubClassOf 'has license' some 'GNU GPL v3' 'RSeQC' SubClassOf 'has website homepage' value "http://rseqc.sourceforge.net/" http://purl.obolibrary.org/obo/SWO_1100143 SAMtools 'SAMtools' SubClassOf 'has license' some 'MIT License' 'SAMtools' SubClassOf 'has website homepage' value "https://github.com/samtools/samtools" 'SAMtools' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100140 HTSeq 'HTSeq' SubClassOf 'has website homepage' value "https://htseq.readthedocs.io/en/release_0.11.1/" 'HTSeq' SubClassOf 'software' 'HTSeq' SubClassOf 'has license' some 'GNU GPL v3' http://purl.obolibrary.org/obo/SWO_1100141 RNA-SeQC 'RNA-SeQC' SubClassOf 'has license' some 'Modified BSD' 'RNA-SeQC' SubClassOf 'software' 'RNA-SeQC' SubClassOf 'has website homepage' value "https://github.com/broadinstitute/rnaseqc" http://purl.obolibrary.org/obo/SWO_1100139 PEAKS DB 'PEAKS DB' SubClassOf 'has license' some 'Proprietary commercial software license' 'PEAKS DB' SubClassOf 'has website homepage' value "http://www.bioinfor.com/peaksdb/" 'PEAKS DB' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100137 SWATH Software 'SWATH Software' SubClassOf 'software' 'SWATH Software' SubClassOf 'has website homepage' value "https://sciex.com/technology/swath-acquisition" 'SWATH Software' SubClassOf 'has license' some 'Proprietary commercial software license' http://purl.obolibrary.org/obo/SWO_1100138 Supernovo 'Supernovo' SubClassOf 'software' 'Supernovo' SubClassOf 'has website homepage' value "https://www.proteinmetrics.com/products/supernovo/" 'Supernovo' SubClassOf 'has license' some 'Proprietary commercial software license' http://purl.obolibrary.org/obo/SWO_1100135 Chromeleon 'Chromeleon' SubClassOf 'has license' some 'Proprietary commercial software license' 'Chromeleon' SubClassOf 'software' 'Chromeleon' SubClassOf 'has website homepage' value "https://www.thermofisher.com/order/catalog/product/CHROMELEON7#/CHROMELEON7" http://purl.obolibrary.org/obo/SWO_1100136 AnalyzerPro 'AnalyzerPro' SubClassOf 'software' 'AnalyzerPro' SubClassOf 'has license' some 'Proprietary commercial software license' 'AnalyzerPro' SubClassOf 'has website homepage' value "https://www.spectralworks.com/products/analyzerpro/" http://www.geneontology.org/formats/oboInOwl#ObsoleteClass obsolete SWO class 'obsolete SWO class' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass 'entity' DisjointWith 'obsolete SWO class' http://www.ebi.ac.uk/swo/SWO_9000083 DNDC 'DNDC' SubClassOf 'software' 'DNDC' SubClassOf 'has interface' some 'command-line interface' http://www.ebi.ac.uk/swo/SWO_9000089 DROID 'DROID' SubClassOf 'software' 'DROID' SubClassOf 'has interface' some 'command-line interface' http://www.ebi.ac.uk/swo/SWO_9000070 Microsoft Excel 'Microsoft Excel' SubClassOf 'output of' some ('software development' and ('has participant' value 'Microsoft')) 'Microsoft Excel' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_9000072 Microsoft Windows 'Microsoft Windows' SubClassOf 'output of' some ('software development' and ('has participant' value 'Microsoft')) 'Microsoft Windows' SubClassOf 'software' 'Microsoft Windows' SubClassOf 'is executed in' some 'manage computer operations' http://www.ebi.ac.uk/swo/SWO_9000071 Microsoft Excel for Windows 2010 'Microsoft Excel for Windows 2010' SubClassOf 'has declared status' some 'Live' http://www.ebi.ac.uk/swo/SWO_9000076 software suite 'software suite' SubClassOf 'has_part' some 'software' http://www.ebi.ac.uk/swo/SWO_9000075 Microsoft Office 2001 'Microsoft Office 2001' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_9000078 Annotare 'Annotare' SubClassOf 'has specified data input' some ('data item' and ('has format specification' some 'MAGE-TAB')) 'Annotare' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000701 snpMatrix 'snpMatrix' SubClassOf 'software' 'snpMatrix' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000700 snapCGH 'snapCGH' SubClassOf 'software' 'snapCGH' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000703 spikeLI 'spikeLI' SubClassOf 'software' 'spikeLI' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000705 splicegear 'splicegear' SubClassOf 'is encoded in' some 'R language' 'splicegear' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000704 spkTools 'spkTools' SubClassOf 'software' 'spkTools' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000707 spotSegmentation 'spotSegmentation' SubClassOf 'software' 'spotSegmentation' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000706 splots 'splots' SubClassOf 'is encoded in' some 'R language' 'splots' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_9000088 MPL 'MPL' SubClassOf 'software license' 'MPL' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/SWO_0000072 CRG TCoffee 9.02.r1228 'CRG TCoffee 9.02.r1228' SubClassOf 'has interface' some 'command-line interface' http://www.ebi.ac.uk/swo/SWO_1100113 GGBase 'GGBase' SubClassOf 'software' 'GGBase' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100115 matlab software 'matlab software' SubClassOf 'is encoded in' some 'MATLAB language' http://www.ebi.ac.uk/swo/SWO_1100111 GEOmetadb 'GEOmetadb' SubClassOf 'software' 'GEOmetadb' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100112 GEOquery 'GEOquery' SubClassOf 'software' 'GEOquery' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100119 'CGHbase' ''CGHbase'' SubClassOf 'software' ''CGHbase'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100104 Agilent Feature Extraction Software 'Agilent Feature Extraction Software' SubClassOf 'software' 'Agilent Feature Extraction Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Agilent Technologies')) http://www.ebi.ac.uk/swo/SWO_1100108 GC-RMA Quantification 'GC-RMA Quantification' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Agilent Technologies')) 'GC-RMA Quantification' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000032 Agilent Scan Control 'Agilent Scan Control' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Agilent Technologies')) 'Agilent Scan Control' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000035 'AnnotationDbi' ''AnnotationDbi'' SubClassOf 'software' ''AnnotationDbi'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000034 Agilent Technologies Software 'Agilent Technologies Software' SubClassOf 'output of' some ('software publishing process' and ('has participant' value 'Agilent Technologies')) http://www.ebi.ac.uk/swo/SWO_0000030 software with command line interface 'software with command line interface' SubClassOf 'has interface' some 'command-line interface' http://www.ebi.ac.uk/swo/SWO_0000044 BLAST+ 2.2.26 'BLAST+ 2.2.26' SubClassOf 'has interface' some 'command-line interface' http://www.ebi.ac.uk/swo/SWO_0000048 BAC 'BAC' SubClassOf 'software' 'BAC' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/license/SWO_1000090 CC BY-NC-SA 4.0 'CC BY-NC-SA 4.0' SubClassOf 'has clause' some 'Non-commercial use only' 'CC BY-NC-SA 4.0' SubClassOf 'has clause' some 'Free' http://www.ebi.ac.uk/swo/SWO_1100124 'DynDoc' ''DynDoc'' SubClassOf 'is encoded in' some 'R language' ''DynDoc'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100127 software before Microsoft 2007 'software before Microsoft 2007' EquivalentTo 'software' and ('has version' some ('version name' and ('followed by' value 'Microsoft 2007 version'))) 'software before Microsoft 2007' EquivalentTo 'software' and ('has version' some ('version name' and (http://www.ebi.ac.uk/swo/SWO_0000300 value 'Microsoft 2007 version'))) 'software before Microsoft 2007' SubClassOf 'has version' some ('version name' and (http://www.ebi.ac.uk/swo/SWO_0000300 value 'Microsoft 2007 version')) http://www.ebi.ac.uk/swo/SWO_1100120 'CGHcall' ''CGHcall'' SubClassOf 'software' ''CGHcall'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_1100121 'CGHregions' ''CGHregions'' SubClassOf 'software' ''CGHregions'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000041 'ArrayTools' ''ArrayTools'' SubClassOf 'is encoded in' some 'R language' ''ArrayTools'' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_1000099 FlowRepository Open Access Terms of Use 'FlowRepository Open Access Terms of Use' SubClassOf 'has clause' some 'No restrictions on derivatives' 'FlowRepository Open Access Terms of Use' SubClassOf 'has clause' some 'Usage unrestricted' 'FlowRepository Open Access Terms of Use' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_1000091 CC BY-SA 2.1 JP 'CC BY-SA 2.1 JP' SubClassOf 'has clause' some 'Source code available' 'CC BY-SA 2.1 JP' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000092 CC BY-SA 3.0 'CC BY-SA 3.0' SubClassOf 'has clause' some 'Source code available' 'CC BY-SA 3.0' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000093 CC BY-SA 3.0 US 'CC BY-SA 3.0 US' SubClassOf 'has clause' some 'Usage unrestricted' 'CC BY-SA 3.0 US' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_1000094 CC BY-SA 4.0 'CC BY-SA 4.0' SubClassOf 'has clause' some 'Usage unrestricted' 'CC BY-SA 4.0' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_1000096 ODbL v1.0 'ODbL v1.0' SubClassOf 'has clause' some 'Source code available' 'ODbL v1.0' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000097 DbCL v1.0 'DbCL v1.0' SubClassOf 'has clause' some 'Usage unrestricted' 'DbCL v1.0' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/SWO_0000062 MUSCLE 3.8.31 'MUSCLE 3.8.31' SubClassOf 'has interface' some 'command-line interface' http://www.ebi.ac.uk/swo/SWO_0000473 arrayQuality 'arrayQuality' SubClassOf 'is encoded in' some 'R language' 'arrayQuality' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000472 arrayMvout 'arrayMvout' SubClassOf 'is encoded in' some 'R language' 'arrayMvout' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000474 arrayQualityMetrics 'arrayQualityMetrics' SubClassOf 'is encoded in' some 'R language' 'arrayQualityMetrics' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000479 'beadarray' ''beadarray'' SubClassOf 'is encoded in' some 'R language' ''beadarray'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000471 aroma.light 'aroma.light' SubClassOf 'is encoded in' some 'R language' 'aroma.light' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000470 'apComplex' ''apComplex'' SubClassOf 'software' ''apComplex'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/license/SWO_1000067 CC BY 2.0 UK 'CC BY 2.0 UK' SubClassOf 'has clause' some 'Source code available' 'CC BY 2.0 UK' SubClassOf 'has clause' some 'Usage unrestricted' 'CC BY 2.0 UK' SubClassOf 'has clause' some 'Derivatives allowed' http://www.ebi.ac.uk/swo/license/SWO_1000064 http://www.ebi.ac.uk/swo/license/SWO_1000064 SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://www.ebi.ac.uk/swo/license/SWO_1000064 SubClassOf 'obsolete SWO class' http://www.ebi.ac.uk/swo/license/SWO_1000065 CC BY 4.0 'CC BY 4.0' SubClassOf 'has clause' some 'Source code available' 'CC BY 4.0' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/SWO_0000483 bgx 'bgx' SubClassOf 'is encoded in' some 'R language' 'bgx' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000002 licence software license 'software license' EquivalentTo inverse ('has license') some 'software' 'software license' SubClassOf inverse ('has license') some 'software' 'software license' EquivalentTo 'information content entity' and ( inverse ('has license') some 'software') http://www.ebi.ac.uk/swo/SWO_0000486 'biocDatasets' ''biocDatasets'' SubClassOf 'is encoded in' some 'R language' ''biocDatasets'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000001 software 'software' SubClassOf 'information content entity' 'software' SubClassOf 'is executed in' some 'data transformation' 'software' SubClassOf 'is executed in' some ('data transformation' or 'data visualization') 'software' SubClassOf 'plan specification' http://www.ebi.ac.uk/swo/SWO_0000485 bioDist 'bioDist' SubClassOf 'software' 'bioDist' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000004 Microsoft Excel 2007 'Microsoft Excel 2007' SubClassOf 'has specified data input' some ('data item' and ('has format specification' some 'XLS spreadsheet')) 'Microsoft Excel 2007' SubClassOf 'has specified data output' some ('data item' and ('has format specification' some 'XLS spreadsheet')) http://www.ebi.ac.uk/swo/SWO_0000488 'biocViews' ''biocViews'' SubClassOf 'software' ''biocViews'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000487 'biocGraph' ''biocGraph'' SubClassOf 'software' ''biocGraph'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000006 Protege 4 'Protege 4' SubClassOf 'software' 'Protege 4' SubClassOf 'is executed in' some 'ontology engineering' http://www.ebi.ac.uk/swo/SWO_0000489 biomaRT 'biomaRT' SubClassOf 'software' 'biomaRT' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000480 'beadarraySNP' ''beadarraySNP'' SubClassOf 'is encoded in' some 'R language' ''beadarraySNP'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000482 bgafun 'bgafun' SubClassOf 'software' 'bgafun' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000481 'betr' ''betr'' SubClassOf 'is encoded in' some 'R language' ''betr'' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_1000055 MPL v2.0 Mozilla Public License Version 2.0 'Mozilla Public License Version 2.0' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000057 Artistic License 2.0 'Artistic License 2.0' SubClassOf 'has clause' some 'Derivatives allowed' 'Artistic License 2.0' SubClassOf 'has clause' some 'Usage unrestricted' 'Artistic License 2.0' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/SWO_0000009 Kakadu 'Kakadu' SubClassOf 'has specified data input' some ('data item' and ('has format specification' some 'image format')) 'Kakadu' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_1000050 CC BY 2.0 'CC BY 2.0' SubClassOf 'has clause' some 'Usage unrestricted' 'CC BY 2.0' SubClassOf 'has clause' some 'Source code available' 'CC BY 2.0' SubClassOf 'has clause' some 'Derivatives allowed' http://www.ebi.ac.uk/swo/license/SWO_1000052 CC BY-SA 2.0 'CC BY-SA 2.0' SubClassOf 'has clause' some 'Source code available' 'CC BY-SA 2.0' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/SWO_0000495 'cellHTS2' ''cellHTS2'' SubClassOf 'is encoded in' some 'R language' ''cellHTS2'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000494 'cellHTS' ''cellHTS'' SubClassOf 'is encoded in' some 'R language' ''cellHTS'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000496 cghMCR 'cghMCR' SubClassOf 'software' 'cghMCR' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000015 Microsoft Excel 2002 'Microsoft Excel 2002' SubClassOf 'software before Microsoft 2007' http://www.ebi.ac.uk/swo/SWO_0000499 'clusterStab' ''clusterStab'' SubClassOf 'software' ''clusterStab'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000491 'bridge' ''bridge'' SubClassOf 'software' ''bridge'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/license/SWO_1000088 CC BY-NC-SA 3.0 US 'CC BY-NC-SA 3.0 US' SubClassOf 'has clause' some 'Free' 'CC BY-NC-SA 3.0 US' SubClassOf 'has clause' some 'Non-commercial use only' http://www.ebi.ac.uk/swo/license/SWO_1000089 CC BY-NC-SA 2.5 IN 'CC BY-NC-SA 2.5 IN' SubClassOf 'has clause' some 'Free' 'CC BY-NC-SA 2.5 IN' SubClassOf 'has clause' some 'Non-commercial use only' http://www.ebi.ac.uk/swo/license/SWO_1000080 CC BY-NC 4.0 'CC BY-NC 4.0' SubClassOf 'has clause' some 'Non-commercial use only' 'CC BY-NC 4.0' SubClassOf 'has clause' some 'Free' http://www.ebi.ac.uk/swo/license/SWO_1000081 CC BY-NC-ND 3.0 'CC BY-NC-ND 3.0' SubClassOf 'has clause' some 'Non-commercial use only' 'CC BY-NC-ND 3.0' SubClassOf 'has clause' some 'Free' http://www.ebi.ac.uk/swo/license/SWO_1000083 CC BY-NC-ND 2.5 'CC BY-NC-ND 2.5' SubClassOf 'has clause' some 'Free' 'CC BY-NC-ND 2.5' SubClassOf 'has clause' some 'Non-commercial use only' http://www.ebi.ac.uk/swo/license/SWO_1000084 CC BY-NC-ND 2.5 CH 'CC BY-NC-ND 2.5 CH' SubClassOf 'has clause' some 'Non-commercial use only' 'CC BY-NC-ND 2.5 CH' SubClassOf 'has clause' some 'Free' http://www.ebi.ac.uk/swo/license/SWO_1000085 CC BY-NC-ND 4.0 'CC BY-NC-ND 4.0' SubClassOf 'has clause' some 'Non-commercial use only' 'CC BY-NC-ND 4.0' SubClassOf 'has clause' some 'Free' http://www.ebi.ac.uk/swo/license/SWO_1000086 CC BY-NC-SA 2.5 'CC BY-NC-SA 2.5' SubClassOf 'has clause' some 'Free' 'CC BY-NC-SA 2.5' SubClassOf 'has clause' some 'Non-commercial use only' http://www.ebi.ac.uk/swo/license/SWO_1000087 CC BY-NC-SA 3.0 'CC BY-NC-SA 3.0' SubClassOf 'has clause' some 'Non-commercial use only' 'CC BY-NC-SA 3.0' SubClassOf 'has clause' some 'Free' http://www.ebi.ac.uk/swo/SWO_0000022 Linux 'Linux' SubClassOf 'has interface' some 'command-line interface' 'Linux' SubClassOf 'is executed in' some 'manage computer operations' 'Linux' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000021 operating system 'operating system' SubClassOf 'is executed in' some 'manage computer operations' http://www.ebi.ac.uk/swo/SWO_0000024 Adobe Illustrator 10 'Adobe Illustrator 10' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000026 software with image input 'software with image input' SubClassOf 'has specified data input' some ('data item' and ('has format specification' some 'image format')) http://www.ebi.ac.uk/swo/SWO_0000025 Microsoft Word 'Microsoft Word' SubClassOf 'output of' some ('software development' and ('has participant' value 'Microsoft')) 'Microsoft Word' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000028 ontology engineering software 'ontology engineering software' SubClassOf 'is executed in' some 'ontology engineering' http://www.ebi.ac.uk/swo/SWO_0000027 OBO-Edit 'OBO-Edit' SubClassOf 'is executed in' some 'ontology engineering' 'OBO-Edit' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000020 Unix 'Unix' SubClassOf 'software' 'Unix' SubClassOf 'is executed in' some 'manage computer operations' 'Unix' SubClassOf 'has interface' some 'command-line interface' http://www.ebi.ac.uk/swo/license/SWO_1000079 CC BY-NC 3.0 'CC BY-NC 3.0' SubClassOf 'has clause' some 'Free' 'CC BY-NC 3.0' SubClassOf 'has clause' some 'Non-commercial use only' http://www.ebi.ac.uk/swo/SWO_0000029 Microsoft developed software 'Microsoft developed software' SubClassOf 'output of' some ('software development' and ('has participant' value 'Microsoft')) http://www.ebi.ac.uk/swo/license/SWO_1000070 GNU AGPL v3 'GNU AGPL v3' SubClassOf 'has clause' some 'Usage unrestricted' 'GNU AGPL v3' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_1000072 CC BY 2.1 JP 'CC BY 2.1 JP' SubClassOf 'has clause' some 'Usage unrestricted' 'CC BY 2.1 JP' SubClassOf 'has clause' some 'Source code available' 'CC BY 2.1 JP' SubClassOf 'has clause' some 'Derivatives allowed' http://www.ebi.ac.uk/swo/license/SWO_1000073 CC BY 2.5 'CC BY 2.5' SubClassOf 'has clause' some 'Derivatives allowed' 'CC BY 2.5' SubClassOf 'has clause' some 'Source code available' 'CC BY 2.5' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000074 CC BY 3.0 AU 'CC BY 3.0 AU' SubClassOf 'has clause' some 'Source code available' 'CC BY 3.0 AU' SubClassOf 'has clause' some 'Usage unrestricted' 'CC BY 3.0 AU' SubClassOf 'has clause' some 'Derivatives allowed' http://www.ebi.ac.uk/swo/license/SWO_1000075 CC BY 3.0 'CC BY 3.0' SubClassOf 'has clause' some 'Source code available' 'CC BY 3.0' SubClassOf 'has clause' some 'Derivatives allowed' 'CC BY 3.0' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000076 CC BY 3.0 US 'CC BY 3.0 US' SubClassOf 'has clause' some 'Derivatives allowed' 'CC BY 3.0 US' SubClassOf 'has clause' some 'Source code available' 'CC BY 3.0 US' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/SWO_0000432 TAS Software 'TAS Software' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000435 TargetSearch 'TargetSearch' SubClassOf 'is encoded in' some 'R language' 'TargetSearch' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000438 TypeInfo 'TypeInfo' SubClassOf 'software' 'TypeInfo' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000442 VanillaICE 'VanillaICE' SubClassOf 'is encoded in' some 'R language' 'VanillaICE' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000446 XDE 'XDE' SubClassOf 'is encoded in' some 'R language' 'XDE' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_1000008 Open source software license 'Open source software license' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/license/SWO_1000009 License without restrictions on derivatives 'License without restrictions on derivatives' SubClassOf 'has clause' some 'No restrictions on derivatives' http://www.ebi.ac.uk/swo/SWO_0000450 Array Comparative Genomic Hybridization 'Array Comparative Genomic Hybridization' SubClassOf 'is encoded in' some 'R language' 'Array Comparative Genomic Hybridization' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000453 affyContam 'affyContam' SubClassOf 'software' 'affyContam' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000452 affxparser 'affxparser' SubClassOf 'is encoded in' some 'R language' 'affxparser' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000455 'affyPLM' ''affyPLM'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000454 affyImGUI 'affyImGUI' SubClassOf 'software' 'affyImGUI' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000457 affyQCReport 'affyQCReport' SubClassOf 'is encoded in' some 'R language' 'affyQCReport' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000456 affyPara 'affyPara' SubClassOf 'is encoded in' some 'R language' 'affyPara' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_1000044 GNU GPL Compatible License Type 'GNU GPL Compatible License Type' SubClassOf 'is compatible license of' some ('GNU GPL v3' or 'GNU GPL v2') http://www.ebi.ac.uk/swo/license/SWO_1000049 CC0 1.0 'CC0 1.0' SubClassOf 'has clause' some 'No restrictions on derivatives' 'CC0 1.0' SubClassOf 'has clause' some 'Usage unrestricted' 'CC0 1.0' SubClassOf 'has clause' some 'Source code available' http://www.ebi.ac.uk/swo/SWO_0000459 'affycoretools' ''affycoretools'' SubClassOf 'is encoded in' some 'R language' ''affycoretools'' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000458 affyTiling 'affyTiling' SubClassOf 'software' 'affyTiling' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/license/SWO_1000043 GNU Project Free License Type 'GNU Project Free License Type' SubClassOf 'software license' 'GNU Project Free License Type' SubClassOf 'has clause' some ('Distribution unrestricted' or 'Distribution with notices') 'GNU Project Free License Type' SubClassOf 'has clause' some 'Usage unrestricted' 'GNU Project Free License Type' SubClassOf 'has clause' some 'Derivatives allowed' http://www.ebi.ac.uk/swo/SWO_0000461 affypdnn 'affypdnn' SubClassOf 'software' 'affypdnn' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000463 altcdfenvs 'altcdfenvs' SubClassOf 'is encoded in' some 'R language' 'altcdfenvs' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000466 'annotate' ''annotate'' SubClassOf 'software' ''annotate'' SubClassOf 'is encoded in' some 'R language' http://www.ebi.ac.uk/swo/SWO_0000465 annaffy 'annaffy' SubClassOf 'is encoded in' some 'R language' 'annaffy' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000468 annotationTools 'annotationTools' SubClassOf 'is encoded in' some 'R language' 'annotationTools' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000460 affyio 'affyio' SubClassOf 'is encoded in' some 'R language' 'affyio' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000405 ArrayExpress Bioconductor 'ArrayExpress Bioconductor' SubClassOf 'is encoded in' some 'R language' 'ArrayExpress Bioconductor' SubClassOf 'software' http://www.ebi.ac.uk/swo/license/SWO_1000004 GNU GPL 'GNU GPL' SubClassOf 'has clause' some 'Source code available' 'GNU GPL' SubClassOf 'software license' 'GNU GPL' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000005 Apache License Version 2.0 'Apache License Version 2.0' SubClassOf 'has clause' some 'No restrictions on derivatives' 'Apache License Version 2.0' SubClassOf 'has clause' some 'Source code available' 'Apache License Version 2.0' SubClassOf 'software license' 'Apache License Version 2.0' SubClassOf 'has clause' some 'Usage unrestricted' http://www.ebi.ac.uk/swo/license/SWO_1000006 Academic Free License version 3 'Academic Free License version 3' SubClassOf 'has clause' some 'Usage unrestricted' 'Academic Free License version 3' SubClassOf 'has clause' some 'Derivatives allowed' 'Academic Free License version 3' SubClassOf 'has clause' some 'Source code available' 'Academic Free License version 3' SubClassOf 'software license' http://www.ebi.ac.uk/swo/license/SWO_1000007 FreeBSD 'FreeBSD' SubClassOf 'has clause' some 'Usage unrestricted' 'FreeBSD' SubClassOf 'has clause' some 'Source code available' 'FreeBSD' SubClassOf 'software license' 'FreeBSD' SubClassOf 'has clause' some 'Derivatives allowed' http://www.ebi.ac.uk/swo/SWO_0000416 ScISI 'ScISI' SubClassOf 'is encoded in' some 'R language' 'ScISI' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_0000422 ShortRead 'ShortRead' SubClassOf 'software' 'ShortRead' SubClassOf 'is encoded in' some 'R language' http://purl.obolibrary.org/obo/OBI_0002232 pathologic primary tumor stage for lung according to AJCC 7th edition 'pathologic primary tumor stage for lung according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/IAO_0000010 software 'software' SubClassOf 'plan specification' http://purl.obolibrary.org/obo/IAO_0000007 action specification 'action specification' SubClassOf 'directive information entity' http://purl.obolibrary.org/obo/IAO_0000009 datum label 'datum label' SubClassOf 'information content entity' http://purl.obolibrary.org/obo/OBI_0002243 pathologic primary tumor stage for kidney according to AJCC 7th edition 'pathologic primary tumor stage for kidney according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label 'measurement unit label' SubClassOf 'datum label' http://purl.obolibrary.org/obo/IAO_0000005 objective specification 'objective specification' SubClassOf 'directive information entity' http://purl.obolibrary.org/obo/OBI_0002256 pathologic primary tumor stage for ovary according to AJCC 7th edition 'pathologic primary tumor stage for ovary according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/GO_0008150 biological_process 'biological_process' SubClassOf 'process' http://purl.obolibrary.org/obo/UO_0000105 frequency unit 'frequency unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/OBI_0000018 material supplier role 'material supplier role' SubClassOf 'service provider role' http://purl.obolibrary.org/obo/OBI_0000017 regulatory role 'regulatory role' SubClassOf 'role' http://purl.obolibrary.org/obo/OBI_0000014 regulator role 'regulator role' SubClassOf 'regulatory role' http://purl.obolibrary.org/obo/OBI_0002205 histologic grade according to AJCC 7th edition 'histologic grade according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0000023 classified data set 'classified data set' EquivalentTo 'is_specified_output_of' some 'class prediction data transformation' 'classified data set' SubClassOf 'data set' 'classified data set' SubClassOf 'is_specified_output_of' some 'class prediction data transformation' http://purl.obolibrary.org/obo/OBI_0002215 histologic grade for ovarian tumor 'histologic grade for ovarian tumor' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0002216 histologic grade for ovarian tumor according to a two-tier grading system 'histologic grade for ovarian tumor according to a two-tier grading system' SubClassOf 'histologic grade for ovarian tumor' http://purl.obolibrary.org/obo/OBI_0002210 histologic grade according to the Fuhrman Nuclear Grading System 'histologic grade according to the Fuhrman Nuclear Grading System' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/IAO_0000037 dot plot 'dot plot' SubClassOf 'graph' http://purl.obolibrary.org/obo/IAO_0000038 graph 'graph' SubClassOf 'diagram' http://purl.obolibrary.org/obo/OBI_0002219 histologic grade for ovarian tumor according to the World Health Organization 'histologic grade for ovarian tumor according to the World Health Organization' SubClassOf 'histologic grade for ovarian tumor' http://purl.obolibrary.org/obo/OBI_0002224 pathologic primary tumor stage for colon and rectum according to AJCC 7th edition 'pathologic primary tumor stage for colon and rectum according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0000047 processed material 'processed material' EquivalentTo 'material entity' and ('is_specified_output_of' some 'material processing') 'processed material' SubClassOf 'material entity' 'processed material' SubClassOf 'is_specified_output_of' some 'material processing' http://purl.obolibrary.org/obo/OBI_0000450 regulatory agency 'regulatory agency' SubClassOf 'has role' some 'regulator role' 'regulatory agency' SubClassOf 'organization' 'regulatory agency' EquivalentTo 'organization' and ('has role' some 'regulator role') http://purl.obolibrary.org/obo/OBI_0000458 manufacturing objective 'manufacturing objective' SubClassOf 'material transformation objective' http://purl.obolibrary.org/obo/OBI_0000457 manufacturing 'manufacturing' EquivalentTo 'achieves_planned_objective' some 'manufacturing objective' 'manufacturing' SubClassOf 'has_specified_input' some 'material entity' 'manufacturing' SubClassOf 'material processing' 'manufacturing' SubClassOf 'achieves_planned_objective' some 'manufacturing objective' http://purl.obolibrary.org/obo/OBI_0000456 material transformation objective 'material transformation objective' SubClassOf 'objective specification' http://purl.obolibrary.org/obo/IAO_0000409 denotator type 'denotator type' EquivalentTo {'universal' , 'defined class' , 'named class expression'} 'denotator type' SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBI_0200190 clustered data visualization 'clustered data visualization' SubClassOf 'has_specified_input' only 'clustered data set' 'clustered data visualization' SubClassOf 'has_specified_output' some ('dot plot' or 'histogram' or 'heatmap' or 'dendrogram' or 'scatter plot') 'clustered data visualization' SubClassOf 'data visualization' http://purl.obolibrary.org/obo/OBI_0200188 cross validation objective 'cross validation objective' SubClassOf 'partitioning objective' http://purl.obolibrary.org/obo/OBI_0200171 partitioning data transformation 'partitioning data transformation' SubClassOf 'data transformation' 'partitioning data transformation' EquivalentTo 'achieves_planned_objective' some 'partitioning objective' 'partitioning data transformation' SubClassOf 'achieves_planned_objective' some 'partitioning objective' http://purl.obolibrary.org/obo/OBI_0200172 partitioning objective 'partitioning objective' SubClassOf 'data transformation objective' http://purl.obolibrary.org/obo/OBI_0200175 class discovery data transformation 'class discovery data transformation' EquivalentTo ('has_specified_output' some 'clustered data set') or ('achieves_planned_objective' some 'class discovery objective') 'class discovery data transformation' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0200179 class prediction objective 'class prediction objective' SubClassOf 'data transformation objective' http://purl.obolibrary.org/obo/OBI_0200178 class discovery objective 'class discovery objective' SubClassOf 'data transformation objective' http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective 'data transformation objective' SubClassOf 'objective specification' http://purl.obolibrary.org/obo/OBI_0000947 service provider role 'service provider role' SubClassOf 'realized in' only 'planned process' 'service provider role' SubClassOf 'characteristic of' some ('Homo sapiens' or 'organization') 'service provider role' SubClassOf 'role' http://purl.obolibrary.org/obo/OBI_0000953 processed specimen 'processed specimen' EquivalentTo 'processed material' and 'specimen' 'processed specimen' SubClassOf 'processed material' 'processed specimen' SubClassOf 'specimen' http://purl.obolibrary.org/obo/OBI_0000963 categorical label 'categorical label' SubClassOf 'datum label' http://purl.obolibrary.org/obo/IAO_0000096 source code module 'source code module' SubClassOf 'directive information entity' http://purl.obolibrary.org/obo/IAO_0000078 curation status specification 'curation status specification' SubClassOf 'data about an ontology part' 'curation status specification' EquivalentTo {'example to be eventually removed' , 'metadata complete' , 'organizational term' , 'ready for release' , 'metadata incomplete' , 'uncurated' , 'pending final vetting' , 'to be replaced with external ontology term' , 'requires discussion'} http://purl.obolibrary.org/obo/OBI_0002279 pathologic lymph node stage for lung according to AJCC 7th edition 'pathologic lymph node stage for lung according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0000094 material processing 'material processing' SubClassOf 'planned process' 'material processing' SubClassOf 'has_specified_input' only 'material entity' 'material processing' SubClassOf 'achieves_planned_objective' some 'material transformation objective' 'material processing' SubClassOf 'has_specified_output' some 'processed material' 'material processing' EquivalentTo 'achieves_planned_objective' some 'material transformation objective' http://purl.obolibrary.org/obo/OBI_0002270 pathologic lymph node stage for colon and rectum according to AJCC 7th edition 'pathologic lymph node stage for colon and rectum according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/APOLLO_SV_00000796 dataset creating 'dataset creating' EquivalentTo 'planned process' and ('has_specified_output' some 'data set') 'dataset creating' SubClassOf 'planned process' 'dataset creating' SubClassOf 'has_specified_output' some 'data set' http://purl.obolibrary.org/obo/OBI_0002284 pathologic lymph node stage for kidney according to AJCC 7th edition 'pathologic lymph node stage for kidney according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0002287 pathologic lymph node stage for ovary according to AJCC 7th edition 'pathologic lymph node stage for ovary according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0002290 pathologic distant metastases stage for colon according to AJCC 7th edition 'pathologic distant metastases stage for colon according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta 'Opisthokonta' SubClassOf 'Eukaryota' http://purl.obolibrary.org/obo/OBI_0002298 pathologic distant metastases stage for lung according to AJCC 7th edition 'pathologic distant metastases stage for lung according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0002356 performance status value specification 'performance status value specification' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0002357 Eastern Cooperative Oncology Group score value specification 'Eastern Cooperative Oncology Group score value specification' SubClassOf 'performance status value specification' http://purl.obolibrary.org/obo/OBI_0002363 Karnofsky score vaue specification 'Karnofsky score vaue specification' SubClassOf 'performance status value specification' http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part 'data about an ontology part' SubClassOf 'data item' http://purl.obolibrary.org/obo/IAO_0000100 data set 'data set' SubClassOf 'data item' http://purl.obolibrary.org/obo/IAO_0000101 image 'image' SubClassOf 'figure' http://purl.obolibrary.org/obo/OBI_0002310 pathologic distant metastases stage for ovary according to AJCC 7th edition 'pathologic distant metastases stage for ovary according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0002314 clinical tumor stage group according to AJCC 7th edition 'clinical tumor stage group according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/IAO_0000179 histogram 'histogram' SubClassOf 'graph' http://purl.obolibrary.org/obo/IAO_0000178 material information bearer 'material information bearer' SubClassOf 'material entity' 'material information bearer' SubClassOf 'bearer of' some ('concretizes' some 'information content entity') 'material information bearer' EquivalentTo 'material entity' and ('bearer of' some ('concretizes' some 'information content entity')) http://purl.obolibrary.org/obo/OBI_0002326 International Federation of Gynecology and Obstetrics cervical cancer stage value specification 'International Federation of Gynecology and Obstetrics cervical cancer stage value specification' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0001000 questionnaire 'questionnaire' SubClassOf 'document' http://purl.obolibrary.org/obo/OBI_0002341 International Federation of Gynecology and Obstetrics ovarian cancer stage value specification 'International Federation of Gynecology and Obstetrics ovarian cancer stage value specification' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0000571 manufacturer role 'manufacturer role' SubClassOf 'characteristic of' some ('Homo sapiens' or 'organization') 'manufacturer role' SubClassOf 'realized in' only 'manufacturing' 'manufacturer role' SubClassOf 'role' http://purl.obolibrary.org/obo/UO_0000270 volumetric flow rate unit 'volumetric flow rate unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/UO_0000280 rate unit 'rate unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/OBI_0000112 specimen role 'specimen role' SubClassOf 'role' 'specimen role' SubClassOf 'characteristic of' some ('material entity' and ('is_specified_output_of' some 'specimen collection process')) http://purl.obolibrary.org/obo/OBI_0002306 pathologic distant metastases stage for kidney according to AJCC 7th edition 'pathologic distant metastases stage for kidney according to AJCC 7th edition' SubClassOf 'categorical value specification' http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota 'Eukaryota' SubClassOf 'organism' http://purl.obolibrary.org/obo/OBI_0200050 dimensionality reduction 'dimensionality reduction' SubClassOf 'class discovery data transformation' 'dimensionality reduction' SubClassOf 'dataset creating' 'dimensionality reduction' SubClassOf ('has_specified_output' some 'clustered data set') and ('achieves_planned_objective' some 'class discovery objective') http://purl.obolibrary.org/obo/OBI_0200051 principal components analysis dimensionality reduction 'principal components analysis dimensionality reduction' SubClassOf 'dimensionality reduction' http://purl.obolibrary.org/obo/OBI_0200041 k-means clustering 'k-means clustering' SubClassOf 'class discovery data transformation' 'k-means clustering' SubClassOf 'partitioning data transformation' 'k-means clustering' SubClassOf 'dataset creating' 'k-means clustering' SubClassOf ('has_specified_output' some 'clustered data set') and ('achieves_planned_objective' some 'class discovery objective') http://purl.obolibrary.org/obo/OBI_0200042 hierarchical clustering 'hierarchical clustering' SubClassOf 'dataset creating' 'hierarchical clustering' SubClassOf ('has_specified_output' some 'clustered data set') and ('achieves_planned_objective' some 'class discovery objective') 'hierarchical clustering' SubClassOf 'class discovery data transformation' http://purl.obolibrary.org/obo/OBI_0000648 clustered data set 'clustered data set' SubClassOf 'data set' 'clustered data set' EquivalentTo 'is_specified_output_of' some 'class discovery data transformation' 'clustered data set' SubClassOf 'is_specified_output_of' some 'class discovery data transformation' http://purl.obolibrary.org/obo/OBI_0200033 leave one out cross validation method 'leave one out cross validation method' SubClassOf 'statistical model validation' http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria 'Bilateria' SubClassOf 'Opisthokonta' http://purl.obolibrary.org/obo/GO_0003674 molecular_function 'molecular_function' SubClassOf 'process' http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification 'categorical value specification' SubClassOf 'value specification' http://purl.obolibrary.org/obo/OBI_0001933 value specification 'value specification' SubClassOf 'information content entity' http://purl.obolibrary.org/obo/BFO_0000034 function 'function' SubClassOf 'disposition' http://purl.obolibrary.org/obo/BFO_0000016 disposition 'disposition' SubClassOf 'realizable entity' 'disposition' DisjointWith 'role' http://purl.obolibrary.org/obo/BFO_0000019 quality 'quality' SubClassOf 'specifically dependent continuant' 'realizable entity' DisjointWith 'quality' 'quality' SubClassOf 'part of' only 'quality' http://purl.obolibrary.org/obo/IAO_0000183 dendrogram 'dendrogram' SubClassOf 'graph' http://purl.obolibrary.org/obo/IAO_0000184 scatter plot 'scatter plot' SubClassOf 'graph' http://purl.obolibrary.org/obo/IAO_0000180 heatmap 'heatmap' SubClassOf 'graph' http://purl.obolibrary.org/obo/IAO_0000225 obsolescence reason specification 'obsolescence reason specification' SubClassOf 'data about an ontology part' 'obsolescence reason specification' EquivalentTo {'failed exploratory term' , 'placeholder removed' , 'terms merged' , 'term imported' , 'term split' , 'out of scope'} 'obsolescence reason specification' EquivalentTo {'failed exploratory term' , 'placeholder removed' , 'terms merged' , 'term imported' , 'term split'} http://purl.obolibrary.org/obo/APOLLO_SV_00000008 software development 'software development' SubClassOf 'planned process' 'software development' SubClassOf 'has_specified_output' some ('software' or 'source code module') 'software development' EquivalentTo 'planned process' and ('has_specified_output' some ('software' or 'source code module')) http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria 'Bacteria' SubClassOf 'organism' http://purl.obolibrary.org/obo/OBI_0100051 specimen 'specimen' EquivalentTo 'material entity' and ('has role' some 'specimen role') 'specimen' SubClassOf 'material entity' 'specimen' SubClassOf 'has role' some 'specimen role' http://purl.obolibrary.org/obo/NCBITaxon_32524 Amniota 'Amniota' SubClassOf 'Tetrapoda' http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda 'Tetrapoda' SubClassOf 'Euteleostomi' http://purl.obolibrary.org/obo/OBI_0000659 specimen collection process 'specimen collection process' SubClassOf 'planned process' 'specimen collection process' EquivalentTo 'planned process' and ('achieves_planned_objective' some 'specimen collection objective') 'specimen collection process' SubClassOf 'has_specified_input' some 'material entity' 'specimen collection process' SubClassOf 'achieves_planned_objective' some 'specimen collection objective' 'specimen collection process' SubClassOf 'has_specified_output' some 'specimen' http://purl.obolibrary.org/obo/OBI_0000663 class prediction data transformation 'class prediction data transformation' SubClassOf 'data transformation' 'class prediction data transformation' EquivalentTo ('has_specified_output' some 'classified data set') or ('achieves_planned_objective' some 'class prediction objective') http://purl.obolibrary.org/obo/OBI_0000684 specimen collection objective 'specimen collection objective' SubClassOf 'objective specification' http://purl.obolibrary.org/obo/OBI_0000749 CART 'CART' SubClassOf 'decision tree building data transformation' http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens 'Homo sapiens' SubClassOf 'Euarchontoglires' http://purl.obolibrary.org/obo/NCBITaxon_10239 Viruses 'Viruses' SubClassOf 'organism' http://purl.obolibrary.org/obo/NCBITaxon_117571 Euteleostomi 'Euteleostomi' SubClassOf 'Vertebrata vertebrates' http://www.w3.org/2002/07/owl#Thing http://purl.obolibrary.org/obo/OBI_0000700 support vector machine 'support vector machine' SubClassOf 'achieves_planned_objective' some 'class prediction objective' 'support vector machine' SubClassOf 'class prediction data transformation' http://purl.obolibrary.org/obo/OBI_0000707 decision tree building data transformation 'decision tree building data transformation' SubClassOf 'achieves_planned_objective' some 'decision tree induction objective' 'decision tree building data transformation' SubClassOf 'data transformation' 'decision tree building data transformation' EquivalentTo 'achieves_planned_objective' some 'decision tree induction objective' http://purl.obolibrary.org/obo/OBI_0000704 decision tree induction objective 'decision tree induction objective' SubClassOf 'data transformation objective' http://purl.obolibrary.org/obo/OBI_0000713 GenePattern software 'GenePattern software' SubClassOf 'software' http://purl.obolibrary.org/obo/OBI_0000727 k-nearest neighbors 'k-nearest neighbors' SubClassOf 'partitioning data transformation' 'k-nearest neighbors' SubClassOf ('has_specified_output' some 'clustered data set') and ('achieves_planned_objective' some 'class discovery objective') 'k-nearest neighbors' SubClassOf 'class discovery data transformation' 'k-nearest neighbors' SubClassOf 'dataset creating' http://purl.obolibrary.org/obo/OBI_0000726 peak matching 'peak matching' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0100026 organism 'organism' SubClassOf 'material entity' 'organism' EquivalentTo 'Viruses' or 'Bacteria' or 'Archaea' or 'Eukaryota' http://purl.obolibrary.org/obo/NCBITaxon_2157 Archaea 'Archaea' SubClassOf 'organism' http://purl.obolibrary.org/obo/OBI_0002076 collection of specimens 'collection of specimens' SubClassOf 'material entity' 'collection of specimens' EquivalentTo 'material entity' and ('has member' only 'specimen') http://www.ebi.ac.uk/swo/SWO_1100135 Chromeleon 'Chromeleon' SubClassOf 'has license' some 'Proprietary commercial software license' 'Chromeleon' SubClassOf 'software' 'Chromeleon' SubClassOf 'has website homepage' value "https://www.thermofisher.com/order/catalog/product/CHROMELEON7#/CHROMELEON7" http://www.ebi.ac.uk/swo/SWO_1100136 AnalyzerPro 'AnalyzerPro' SubClassOf 'software' 'AnalyzerPro' SubClassOf 'has website homepage' value "https://www.spectralworks.com/products/analyzerpro/" 'AnalyzerPro' SubClassOf 'has license' some 'Proprietary commercial software license' http://www.ebi.ac.uk/swo/SWO_1100137 SWATH Software 'SWATH Software' SubClassOf 'software' 'SWATH Software' SubClassOf 'has website homepage' value "https://sciex.com/technology/swath-acquisition" 'SWATH Software' SubClassOf 'has license' some 'Proprietary commercial software license' http://www.ebi.ac.uk/swo/SWO_1100138 Supernovo 'Supernovo' SubClassOf 'has website homepage' value "https://www.proteinmetrics.com/products/supernovo/" 'Supernovo' SubClassOf 'software' 'Supernovo' SubClassOf 'has license' some 'Proprietary commercial software license' http://www.ebi.ac.uk/swo/SWO_1100133 Stavrox 'Stavrox' SubClassOf 'has website homepage' value "http://www.stavrox.com" 'Stavrox' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100134 ProteomicsTools 'ProteomicsTools' SubClassOf 'has website homepage' value "https://github.com/shengqh/RCPA.Tools/wiki" 'ProteomicsTools' SubClassOf 'software' 'ProteomicsTools' SubClassOf 'has license' some 'GNU GPL v3' http://www.ebi.ac.uk/swo/SWO_1100139 PEAKS DB 'PEAKS DB' SubClassOf 'has license' some 'Proprietary commercial software license' 'PEAKS DB' SubClassOf 'has website homepage' value "http://www.bioinfor.com/peaksdb/" 'PEAKS DB' SubClassOf 'software' http://purl.obolibrary.org/obo/UO_0000002 mass unit 'mass unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/UO_0000003 time unit 'time unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/UO_0000001 length unit 'length unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/UO_0000006 substance unit 'substance unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/UO_0000005 temperature unit 'temperature unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires 'Euarchontoglires' SubClassOf 'Mammalia' http://www.ebi.ac.uk/swo/SWO_1100140 HTSeq 'HTSeq' SubClassOf 'has website homepage' value "https://htseq.readthedocs.io/en/release_0.11.1/" 'HTSeq' SubClassOf 'software' 'HTSeq' SubClassOf 'has license' some 'GNU GPL v3' http://www.ebi.ac.uk/swo/SWO_1100141 RNA-SeQC 'RNA-SeQC' SubClassOf 'has license' some 'Modified BSD' 'RNA-SeQC' SubClassOf 'software' 'RNA-SeQC' SubClassOf 'has website homepage' value "https://github.com/broadinstitute/rnaseqc" http://www.ebi.ac.uk/swo/SWO_1100142 RSeQC 'RSeQC' SubClassOf 'software' 'RSeQC' SubClassOf 'has license' some 'GNU GPL v3' 'RSeQC' SubClassOf 'has website homepage' value "http://rseqc.sourceforge.net/" http://www.ebi.ac.uk/swo/SWO_1100143 SAMtools 'SAMtools' SubClassOf 'has license' some 'MIT License' 'SAMtools' SubClassOf 'has website homepage' value "https://github.com/samtools/samtools" 'SAMtools' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100144 FastQC 'FastQC' SubClassOf 'has license' some 'GNU GPL v2' 'FastQC' SubClassOf 'has website homepage' value "https://github.com/s-andrews/FastQC" 'FastQC' SubClassOf 'software' http://www.ebi.ac.uk/swo/SWO_1100145 CutAdapt 'CutAdapt' SubClassOf 'software' 'CutAdapt' SubClassOf 'has website homepage' value "https://cutadapt.readthedocs.io/en/stable/" 'CutAdapt' SubClassOf 'has license' some 'MIT License' http://purl.obolibrary.org/obo/UO_0000051 concentration unit 'concentration unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/PATO_0000001 quality 'quality' SubClassOf 'specifically dependent continuant' http://purl.obolibrary.org/obo/GO_0016740 transferase activity 'transferase activity' SubClassOf 'catalytic activity' http://purl.obolibrary.org/obo/NCBITaxon_40674 Mammalia 'Mammalia' SubClassOf 'Amniota' http://purl.obolibrary.org/obo/UO_0000095 volume unit 'volume unit' SubClassOf 'measurement unit label' http://purl.obolibrary.org/obo/OBI_0000792 statistical model validation 'statistical model validation' SubClassOf 'partitioning data transformation' 'statistical model validation' EquivalentTo 'achieves_planned_objective' some 'cross validation objective' 'statistical model validation' SubClassOf 'achieves_planned_objective' some 'cross validation objective' http://purl.obolibrary.org/obo/IAO_0000310 document 'document' SubClassOf 'information content entity' http://purl.obolibrary.org/obo/GO_0016772 transferase activity, transferring phosphorus-containing groups 'transferase activity, transferring phosphorus-containing groups' SubClassOf 'transferase activity' http://purl.obolibrary.org/obo/IAO_0000308 figure 'figure' SubClassOf 'information content entity' http://purl.obolibrary.org/obo/IAO_0000309 diagram 'diagram' SubClassOf 'figure' http://purl.obolibrary.org/obo/GO_0016301 kinase activity 'kinase activity' SubClassOf 'transferase activity, transferring phosphorus-containing groups' 'kinase activity' SubClassOf 'is kinase activity' some Self http://purl.obolibrary.org/obo/OBI_0002989 material supplier 'material supplier' EquivalentTo ('Homo sapiens' or 'organization') and ('has role' some 'material supplier role') 'material supplier' SubClassOf 'material entity' 'material supplier' SubClassOf 'has role' some 'material supplier role' http://purl.obolibrary.org/obo/OBI_0000835 manufacturer 'manufacturer' SubClassOf 'material entity' 'manufacturer' EquivalentTo ('Homo sapiens' or 'organization') and ('has role' some 'manufacturer role') 'manufacturer' SubClassOf 'has role' some 'manufacturer role' http://purl.obolibrary.org/obo/GO_0003824 catalytic activity 'catalytic activity' SubClassOf 'molecular_function' http://purl.obolibrary.org/obo/NCBITaxon_7742 Vertebrata vertebrates 'Vertebrata vertebrates' SubClassOf 'Bilateria' http://www.w3.org/2002/07/owl#DeprecatedClass http://purl.obolibrary.org/obo/SWO_1100133 Stavrox 'Stavrox' SubClassOf 'has website homepage' value "http://www.stavrox.com" 'Stavrox' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100134 ProteomicsTools 'ProteomicsTools' SubClassOf 'has website homepage' value "https://github.com/shengqh/RCPA.Tools/wiki" 'ProteomicsTools' SubClassOf 'software' 'ProteomicsTools' SubClassOf 'has license' some 'GNU GPL v3' http://purl.obolibrary.org/obo/SWO_1100144 FastQC 'FastQC' SubClassOf 'has website homepage' value "https://github.com/s-andrews/FastQC" 'FastQC' SubClassOf 'has license' some 'GNU GPL v2' 'FastQC' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100145 CutAdapt 'CutAdapt' SubClassOf 'software' 'CutAdapt' SubClassOf 'has website homepage' value "https://cutadapt.readthedocs.io/en/stable/" 'CutAdapt' SubClassOf 'has license' some 'MIT License' http://purl.obolibrary.org/obo/SWO_1100142 RSeQC 'RSeQC' SubClassOf 'software' 'RSeQC' SubClassOf 'has license' some 'GNU GPL v3' 'RSeQC' SubClassOf 'has website homepage' value "http://rseqc.sourceforge.net/" http://purl.obolibrary.org/obo/SWO_1100143 SAMtools 'SAMtools' SubClassOf 'has license' some 'MIT License' 'SAMtools' SubClassOf 'has website homepage' value "https://github.com/samtools/samtools" 'SAMtools' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100140 HTSeq 'HTSeq' SubClassOf 'has website homepage' value "https://htseq.readthedocs.io/en/release_0.11.1/" 'HTSeq' SubClassOf 'software' 'HTSeq' SubClassOf 'has license' some 'GNU GPL v3' http://purl.obolibrary.org/obo/SWO_1100141 RNA-SeQC 'RNA-SeQC' SubClassOf 'has license' some 'Modified BSD' 'RNA-SeQC' SubClassOf 'software' 'RNA-SeQC' SubClassOf 'has website homepage' value "https://github.com/broadinstitute/rnaseqc" http://purl.obolibrary.org/obo/SWO_1100139 PEAKS DB 'PEAKS DB' SubClassOf 'has license' some 'Proprietary commercial software license' 'PEAKS DB' SubClassOf 'has website homepage' value "http://www.bioinfor.com/peaksdb/" 'PEAKS DB' SubClassOf 'software' http://purl.obolibrary.org/obo/SWO_1100137 SWATH Software 'SWATH Software' SubClassOf 'software' 'SWATH Software' SubClassOf 'has website homepage' value "https://sciex.com/technology/swath-acquisition" 'SWATH Software' SubClassOf 'has license' some 'Proprietary commercial software license' http://purl.obolibrary.org/obo/SWO_1100138 Supernovo 'Supernovo' SubClassOf 'software' 'Supernovo' SubClassOf 'has website homepage' value "https://www.proteinmetrics.com/products/supernovo/" 'Supernovo' SubClassOf 'has license' some 'Proprietary commercial software license' http://purl.obolibrary.org/obo/SWO_1100135 Chromeleon 'Chromeleon' SubClassOf 'has license' some 'Proprietary commercial software license' 'Chromeleon' SubClassOf 'software' 'Chromeleon' SubClassOf 'has website homepage' value "https://www.thermofisher.com/order/catalog/product/CHROMELEON7#/CHROMELEON7" http://purl.obolibrary.org/obo/SWO_1100136 AnalyzerPro 'AnalyzerPro' SubClassOf 'software' 'AnalyzerPro' SubClassOf 'has license' some 'Proprietary commercial software license' 'AnalyzerPro' SubClassOf 'has website homepage' value "https://www.spectralworks.com/products/analyzerpro/"